BAC Information

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BAC

Clone NameMSMg01-420M09
Chromosome5 (Build37)
Map Location 125,908,738 - 125,908,953
singlet/doubletsinglet
Overlap geneDhx37
Upstream geneSetd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc
Downstream geneBri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M09.T7 (MSMg01no420_m09.b1)MSMg01-420M09.TJ (MSMg01no420_m09.g1)
ACCAG515558AG515559
length979731
length of high quality
(start - end)
---216 (323 - 538)
definitionCHROMAT_FILE: MSMg01no420_m09.b1 PHD_FILE: MSMg01no420_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005CHROMAT_FILE: MSMg01no420_m09.g1 PHD_FILE: MSMg01no420_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACNNGGGGGAACGAACAAACNNANCNNNCCGAGAAAAAANAAGATAG
AATTTGCGGCGGTGATACGANNAACCAAATCCTGTATCGCTNNGGAANNN
NNAANCGGTNACANGGAGCCGCAGAGNNNNAANCNNAGNANNTGGGGAGG
NAGANGNNAGGGGATTTTTGAGCCAGAAAGAAAGGGAGGAGGAGAGAGAG
AGGGCAAGAAAAGGAGGAGGAGGGGGGGGAGAAAAGGAAGACAGAGAAAG
GAGAGAAGAGAGAGGAAAACGAGAAGAGGGAGAGAAAAAAAAGAAAAAGG
AGAAAAAGAGGAGAAGGGAAAAGAGGGGGAGAAAGGAAGGAGAGAGAGGG
AAGAAGAAGAAAGGAAGGAGGGAGGAGGGGGTTTTATTATTATGGGAGAA
GAAAAAAAAAAGAGGAGGAAAGAAGAGGAAGAAAAAGAGAAAAACAGAGA
AAAAGAAAGAGGGAGAGAGAAGAAGAGAAGAGAGGAGAGGAGGGAAAAGA
ACGNGAAGAAGGAGAGAGAGGGAGAGGAGGAGGAAGGAGAAGAACGGAGG
AGAAAAAAAGAGGAGAAGGAGGGAGAAGAGAGAAGAAAGAGAAGAGAGAG
GGGGGGGACAGAGAGGAAGGGAGAAGGAGAAAGGAGGGAAGGGGGAGGAA
GAGAGAGAAGAAAGAGGGGGAGGGAGAAGAGGAGGAAGATGAAGAAGAGA
AGGAGAAGGAAAGAAAGAAGAGAGAACCGAAGAGGAAGGACGGGAGAGAA
AAAGAAGGAGGAGAAAGAGAGAGAAAAGAGAGAAGAGAGAAAAGAGATAG
AAGAGAAGAAAAAGAGGAAGAGGAGAAAAAGAGAGAAAGAAAGGAGAAGA
AAGAAAAGAGAGAGAAGAGAAAGGAGAGAGAAGAGGGGGAAGAGAAGGAG
GGAAAGGAGAGAGGAGAAGAGGGAGGAGGGAGAAAGGACAAGGAGAAGAG
AGGAGGAGAGGGAGAGAGAAAGAAGAGAG
TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTGGCAGAAGAGTTGCCGAGGCGATGCAGA
ACTCTAGTGTCCTCTTCACCTGGGGCCCCTGCTCTGTCAGCATTTCTAGG
TGGTACTTGTCCCTGTTGTCTGAGCTCAGGCTTTCCCTGGACTTAACCAG
TCTATTCAGGAATGATATGCAGCTCAGAAACCCCCCTCTCCCCCCTATGA
GAATTTTCCTCATTCTGATAGCATCTCTTGGAGATGGGTCCCAGCTGTGT
ACTGAGTTCTGCTAGTTCTTCTTCAGTGCTGTGCAGTGTGGGCTGCCCCC
TGGCTGACTTGTGGCTATGCTGTACTGACACCAGGCAGGCGATGTTTGTA
CCCTGTTTTCTGGGTCTCGCCTTCAGTGACTAGTGACATTGAAGTGTATG
TTGATGGCTCCAGGACAGACAGTCATGGCTAATGTGTCTTCTTCCCCAGT
GAGGACAGCATCATCGGTGTCACAGAACCCCGCCGAGTGGCCGCAGTAGC
CATGTCCCAGCGGTTGGCCAAGGAGATGAACCTGTCACATCGGTGAGGCC
CTGATTCCTGGGGATATAGGGGACTTTGCAGGCTTGCTGGCAGGAGGTTG
CTTTTGTTATTCCGTTTGCCTCTCTCCCAGCGATGTTCCAGCAGATTACT
CTCCTTCTGCTGAGGTATGGGTTTTCGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m09.g1 MSMg01no420_m09.g1 CHROMAT_FILE:
MSMg01no420_m09.g1 PHD_FILE: MSMg01no420_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:43 2005
         (216 letters)



>mm_chr5_125908538_125909153
          Length = 616

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgctgtgcagtgtgggctgccccctggctgacttgtggctatgctgtactgacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcagtgctgtgcagtgtgggctgccccctggctgacttgtggctatgctgtactgacacc 357

                                                                       
Query: 61  aggcaggcgatgtttgtaccctgttttctgggtctcgccttcagtgactagtgacattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 356 aggcaggcgatgtttgtaccctgttttctgggtctcgccttcagtgactagtgacgttga 297

                                                                       
Query: 121 agtgtatgttgatggctccaggacagacagtcatggctaatgtgtcttcttccccagtga 180
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 296 agtgtatgttgatggctccgggacagacagtcatgggtaatgtgtcttcttccccagtga 237

                                               
Query: 181 ggacagcatcatcggtgtcacagaaccccgccgagt 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggacagcatcatcggtgtcacagaaccccgccgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)