Query= MSMg01no421_b08.b1 MSMg01no421_b08.b1 CHROMAT_FILE:
MSMg01no421_b08.b1 PHD_FILE: MSMg01no421_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
(528 letters)
>mm_chr5_76304933_76305861
Length = 929
Score = 1000 bits (517), Expect = 0.0
Identities = 526/529 (99%), Gaps = 1/529 (0%)
Strand = Plus / Minus
Query: 1 acaatgccaggtttgg-ttttttttccaggatccagttatctcactggtgaaattgaaac 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acaatgccaggtttggtttttttttccaggatccagttatctcactggtgaaattgaaac 670
Query: 60 aaaataaaacaaacaaaaaccccttcaacatgacctagcctatcactaatgtctcttttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aaaataaaacaaacaaaaaccccttcaacatgacctagcctatcactaatgtctcttttc 610
Query: 120 tgatccaaaactttcctaggagccaggaaaaggtagaaaccgctcctgaataccccagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgatccaaaactttcctaggagccaggaaaaggtagaaaccgctcctgaataccccagga 550
Query: 180 tgctggagattcagggtgcctggataatcttggctttttaaaggtaggagattccctggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgctggagattcagggtgcctggataatcttggctttttaaaggtaggagattccctggt 490
Query: 240 ttccatgctagcatgtgccaccttcttactttgtgtattttaactggcaatgccactcat 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 489 ttccatgctagcatgtgccaccttcttactttatgtattttaactggcaatgccactcat 430
Query: 300 tcctatgacttcagttatctcctataaatggtcaaattccaaatgtggcccctagtagtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcctatgacttcagttatctcctataaatggtcaaattccaaatgtggcccctagtagtt 370
Query: 360 tcttgtgagccagacagagtgttctgtctgtccagctgcatatatctctacatgtgctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttgtgagccagacagagtgttctgtctgtccagctgcatatatctctacatgtgctta 310
Query: 420 cacactgagccccagctgagcatgcagaacacacacaggaatggtttcttcttttctttt 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 309 cacactgagccccagctgagcatgcagaacacacacaggaatgttttcttcttttctttt 250
Query: 480 ctattatacttcatgattatgaaataaaacttcaaaaatattttattta 528
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctattatacttcatgattatgaaataaaacttcaaaaatattttattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_b08.g1 MSMg01no421_b08.g1 CHROMAT_FILE:
MSMg01no421_b08.g1 PHD_FILE: MSMg01no421_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
(482 letters)
>mm_chr5_76135234_76136115
Length = 882
Score = 855 bits (442), Expect = 0.0
Identities = 474/489 (96%), Gaps = 7/489 (1%)
Strand = Plus / Plus
Query: 1 caaagatcacaaaacatggccatgtgctctgggaagatgtcttctggcaactccgtcttc 60
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 194 caaagaccacaaaacatggccatgtgctctgggaagaagtcttctggcaactccgtcttc 253
Query: 61 acaaaggcacttttagtaatgagccttggcaccggagtaagccgcatcctgccccagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acaaaggcacttttagtaatgagccttggcaccggagtaagccgcatcctgccccagggt 313
Query: 121 gggtcccgccattgtcctctgtgggcagccacagggagccaaagatgtcatactgtccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggtcccgccattgtcctctgtgggcagccacagggagccaaagatgtcatactgtccga 373
Query: 181 gggtgtgccacctgggaaaccactttaaagacaacagtggtgctggctcccaggcccgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gggtgtgccacctgggaaaccactttaaagacaacagtggtgctggctcccaggcccgcc 433
Query: 241 cttctcatacagtctcagtgttaacatctttaagaaaagtcccccttctttcatgtccca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttctcatccagtctcagtgttaacatctttaagaaaagtcccccttctttcatgtccca 493
Query: 301 tgaagcaggaggcaagtgagattccacacagcaaaggca-------atagcgactccata 353
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 494 tgaagcaggaggcaagtgagattccacccggcaaaggcattgggtaatagcgactccata 553
Query: 354 gcaatcagcttagacagcacggctcacaccagctctggctcagtgaggacattagggggt 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 554 gcaatcagcttagacagcacggctcacaccagctctggctcagtgatgacattagggggt 613
Query: 414 gagactatttgtcccttanagactccaatttcagaacttcaaatcgctcacgggctttta 473
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagaatatttgtcccttaaagactccaatttcagaacttcaaatcgctcacgggctttta 673
Query: 474 tcatttgtc 482
|||||||||
Sbjct: 674 tcatttgtc 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
