NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGACGATTCCAAGACAGTCTATCAGAAGTAAAGCGGGGAGAGA
GAGTAGGAGCAAAGAGGAAACATGGTGCACCAATTAAGTATACAGGCCTT
TCCATGGGTCTTGAACCGGAGGAAAAGTTAAGGTCAGGGAAAAATACCTG
GGGAGAGATTGGAAGGAAAGAGGAGAAAAATGAGAGAGAAAAGTACCAGC
CAGATAAAATGCTAGCTAATCAGTCAAGGAAAAAGCCAAAAGCAGCTGGC
GAAGGCCAGCTTGCTGCTCGGCCTCTCGAGCAGTTGGCTTCAAGGTCATA
GTGCACCTCCACCCTATGTGGAGCCCTCACCCTGCATAATGCGTCAGCCC
TGCGCAGAGAGGCAATGGACAGAGAGGCAATGTGCAGACTCGTTTATTCC
CAGAGAGAAACAAAGAAAAATGCAACAGGCATTTCCGGTCTTTAAAGGAG
CCGAGCAGTGGTGGCGCAAGCCATTAATCCCAGCACTTGGGAGACAGAGG
CAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTGGAGTTGTAGAT
CAGGATTATAAAGGGGAACTTCAGGGTCTCTGTTCTTGCCTCAAGTTGTC
TTTTCTATATCAATAGGGACAGAATAGCTCCACTAATAAATTTGCCCAGG
CCACATGCCTGTTTTTCTTTCCTTTGGTATTCCCTTGGCCTGCCGAAGGG
ATTGTTTTTATTGGGAAGGAT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTATTCTCAGGACATATTATG
ATTATCACTTATCCCATTGGTTAAAATTTTCACGTTCTCATAAATATTTT
CTAAAAACTAAAGTTTTTTTTTTTTTTAAGCTGGGAAATACCCTGCCAAG
GCAATAGTATGTCAAAATATTACCTTTGGTCTTGACCACTGACTTTTATA
TCTCTTAGTAATTAAATATGTAGGAAGCTAATTCATTTCCAGCCATTAAT
TTTCATTTCAGGTTAAGTGCTTTGTCTGTTTGACTTCATTTCAAATTATC
AGGACCTGAACCTAGACATCCCTGGCAAAACATAAAAAAACTCAAAATTC
CAGGAGTCCAATTAATCTCTTTTCTGACAGAAGTGACCATAGAAAAATGA
GAAAAGAACATCTTTTAAAAAACAACATCTAAATCTTCCATGAGATATGG
AAGAACAAAACACAAAAGTAAATTTAAGGTTAGGAGCTTTGACTATTGTT
TTTAGGACAGTATTTCTGTATAACTGGTGTGCCAGATATTTTTTTAAGAT
GACCACTTCTATTTATTGGTGTGGATGGATGGGGAAAGTCCCCCNGAAAA
TGAAATTTTTTTCTCTAGAAAAACTCCCCAGGAAATGAGCCCTTTTTTTT
TATTTTATTCCCAGTATATCCCCACTAAATGACCCCCAAGATATTTTGTT
CCCTTCCCAAATGGGGAAAA

Query= MSMg01no421_h16.g1 MSMg01no421_h16.g1 CHROMAT_FILE:
MSMg01no421_h16.g1 PHD_FILE: MSMg01no421_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:40 2005
         (468 letters)



>mm_chr5_58562701_58563568
          Length = 868

 Score =  859 bits (444), Expect = 0.0
 Identities = 464/474 (97%), Gaps = 6/474 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtattctcaggacatattatgattatcacttatcccattggttaaaattttcacgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aggtattctcaggacatattatgattatcacttatcccattggttaaaattttcacgttc 254

                                                                       
Query: 61  tcataaatattttctaaaaactaaag------ttttttttttttttaagctgggaaatac 114
           ||||||||||||||||||||||||||      |||||||||||||| |||||||||||||
Sbjct: 255 tcataaatattttctaaaaactaaagtttttttttttttttttttttagctgggaaatac 314

                                                                       
Query: 115 cctgccaaggcaatagtatgtcaaaatattacctttggtcttgaccactgacttttatat 174
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 cctgccaaggcaatagtatgtcaaaagattacctttggtcttgaccactgacttttatat 374

                                                                       
Query: 175 ctcttagtaattaaatatgtaggaagctaattcatttccagccattaattttcatttcag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctcttagtaattaaatatgtaggaagctaattcatttccagccattaattttcatttcag 434

                                                                       
Query: 235 gttaagtgctttgtctgtttgacttcatttcaaattatcaggacctgaacctagacatcc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gttaagtgctttgtctgtttgacttcatttcaaattatcaggacctgaacctagacatcc 494

                                                                       
Query: 295 ctggcaaaacataaaaaaactcaaaattccaggagtccaattaatctcttttctgacaga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctggcaaaacataaaaaaactcaaaattccaggagtccaattaatctcttttctgacaga 554

                                                                       
Query: 355 agtgaccatagaaaaatgagaaaagaacatcttttaaaaaacaacatctaaatcttccat 414
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agtgaccatagagaaatgagaaaagaacatcttttaaaaaacaacatctaaatcttccat 614

                                                                 
Query: 415 gagatatggaagaacaaaacacaaaagtaaatttaaggttaggagctttgacta 468
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 615 gagatatggaagaacaaaacataaaagtaaatttaaggttaggagctttgacta 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)