Query= MSMg01no421_i01.b1 MSMg01no421_i01.b1 CHROMAT_FILE:
MSMg01no421_i01.b1 PHD_FILE: MSMg01no421_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:42 2005
(518 letters)
>mm_chr5_28641141_28642058
Length = 918
Score = 874 bits (452), Expect = 0.0
Identities = 503/524 (95%), Gaps = 10/524 (1%)
Strand = Plus / Plus
Query: 5 gaattccatttctttcttcttagaagattttactttctcaatgccatagctatgttagag 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattccatttctttcttgttagaagattttactttctcaatgccatagctatgttagag 254
Query: 65 catgagatttgagtcaagatggatacagagttgaaatcctgattcatttgtt-aaagtga 123
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 255 catgagatttgagtcaagatggatacagagttgaaatcgtgattcatttgttgaaagtgc 314
Query: 124 agatccagagacttttga-----ttaatcttcacttgccccactttttaattagtaaaat 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 agatccagagacttttgattaatttaatcttcacttgccccactttttaattagtaaaat 374
Query: 179 gtatggcccttatggaggcatagagtgtggagcaaatggtcattccatgacttatagact 238
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 375 gtacggcccttatggaggcatagagtgtggagcaaatgatcattccatgacttatagact 434
Query: 239 gcctgtgcttctaagttgctttactttttgtgctttcagtcactatt---tttt-tttat 294
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 435 gcctgtgcttctaacttgctttactttttgtgctttcagtcactattccattttatttat 494
Query: 295 ttatttgtttatttatttaagccaatagaaagtctttattatagctggtcagtgactaca 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgtttgtttatttatttaagccaatagaaagtctttattatagctggtcagtgactaca 554
Query: 355 ctgggtgttaggtagacgtctttgatctccacaaaagacattgttctcctacttcattct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgggtgttaggtagacgtctttgatctccacaaaagacattgttctcctacttcattct 614
Query: 415 ataggtacacaagatttttattcactcataattgaagtgttagttaatttaggtgaagtg 474
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 615 gtaggtacacaagatttttattcactcataattgaagtgttagttaactcaggtgaagtg 674
Query: 475 tttcaaatagaaattattcttttggaatataggattcaaaagcc 518
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 675 tttcaaatagaaactattcttttggaatataggattcaaaagcc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_i01.g1 MSMg01no421_i01.g1 CHROMAT_FILE:
MSMg01no421_i01.g1 PHD_FILE: MSMg01no421_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:42 2005
(519 letters)
>mm_chr5_28775861_28776777
Length = 917
Score = 936 bits (484), Expect = 0.0
Identities = 510/519 (98%), Gaps = 3/519 (0%)
Strand = Plus / Minus
Query: 1 atagcctctagaacttgaactacagacagttggggacccttttgtgggtactgggagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atagcctctagaacttgaactacagacagttggggacccttttgtgggtactgggagtcg 580
Query: 61 aacctgaatcctctggaagagcagtcagtgctcttaacggctgaaccatctctctcaagc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aacctgaatcttctggaagagcagtcagtgctcttaacggctgaaccatctctctcaagc 520
Query: 121 caccccctctgtttttaataaacttttattgaaataaaaagatataatgaatgcctgctt 180
||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 519 caccccctctg-ttttaacaaacttttattgaaagaaaaagatataatgaatgcctgctt 461
Query: 181 tatgctggaatctgtcaccaccaagcctcatacagaccaaacatgcattgtatatatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatgctggaatctgtcaccaccaagcctcatacagaccaaacatgcattgtatatatgca 401
Query: 241 cagctcccctgcctttgacactctgtccttgggtaacaaactacatcaggacctgacagt 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 400 cagctcccctgcctttgacactctgtgcttgggtaacaaactacatcaggacctgacagt 341
Query: 301 gcagtgggggaaacaatcttctgacactttttattttgaaataagattttttttccagtg 360
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 340 gcagtggggg-aacaatcttctgacactttttattttgaaataaga-tttttttccagtg 283
Query: 361 gcctcctatagtcttgaattcactctgtagcgtagataggccttgaacttggtaatcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcctcctatagtcttgaattcactctgtagcgtagataggccttgaacttggtaatcttc 223
Query: 421 ctgcctcatcccctcagctgggtttgcaggcctgtagagtcagacaccactcattagtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctgcctcatcccctcagctgggtttgcaggcctgtagagtcagacaccactcattagtat 163
Query: 481 ctatganatgtgtagtagcattatacggtattatgtagt 519
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 162 ctatgaaatgtgtagtagcattatacagtattatgtagt 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 917
Length adjustment: 10
Effective length of query: 509
Effective length of database: 907
Effective search space: 461663
Effective search space used: 461663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
