BAC Information

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BAC

Clone NameMSMg01-422G05
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,034
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422G05.T7 (MSMg01no422_g05.b1)MSMg01-422G05.TJ (MSMg01no422_g05.g1)
ACCAG516789AG516790
length775778
length of high quality
(start - end)
120 (114 - 233)362 (65 - 426)
definitionCHROMAT_FILE: MSMg01no422_g05.b1 PHD_FILE: MSMg01no422_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:49 2005CHROMAT_FILE: MSMg01no422_g05.g1 PHD_FILE: MSMg01no422_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGGGCGCTATACGAATCCTATTTCATACTAGCCGCGGAATCANNGTTTTC
CCAAAACAGACATGNNGAAATGACATATTTTCTGTACCATTTCTCTGCTG
AACCACTCTGGCGTTCTTTCGCAGCTCCTGGCTATTAAAAATAAGGCTGC
TATGAACATAGTGGAACATGTGTCCTTATTACAACATCTTCTGGATAGAT
ATCCAGGAGGCGGTATACCTGGGGACTATGACCACTTTTCGTGAGGTACT
GTCAAACTGACTTCCGGGAGTGGTTGCACCAGTTTGCAATCGCACCAGCG
ATGTTTTATATTTTTTTTGCACATCCCTGCCTGCATCTGCGGGCCATCTG
AGCTTCTCACCCTATTCCTTCTGACTGTCGTGATGCGCAATCCTCACCAC
CCTTTCGTATTTTCATTTCCCTGATTACTAATGACGCTCAACATTTTTTT
TATACGCTTATCCTCTCCTTCCCGCTTCCTTCTCTTAAATAACATCACTC
GTTTAGTTCCTTATCCCCCTTTTCTACTTTCTATCTATTTATAATCTCCT
GTTATTCTAATCTTTTGGAAATCCTTTATTATATTTTAGTTCTCCTATTC
CTCCTTGTCCACTGAGCCTCTCATCAAACTTTCCATTTTCTAACACATAT
ATGTTGAACCTAATTCCAACACCAACTATTTAAACTTTCTAAGCCATTAT
TACACCAAAATTCTAAATCTTTACCAAAAATTTATATACCATCTCCACCT
CCCCATACCCTCCCCTTTTCTCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGA
TAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAG
TCTGAGTAGCCGGTGGGCATCCCTACACATGTGCCTGTGGGTAGCTGACA
GATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCCCT
GTTCTGGTGCTTAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACT
TGAGAGGAGCTTGTTGTTTGATTATGGGATGGATCCCCGGGTGGGGTAGT
CTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCTGTAACTCCTTCC
ATGGGTATTTTGTTCTCTATTCTGACACTACTGCATATGCCTGCATTATT
TTGCTGAAAGGACTTTGATATTTTCTGTTTTGCGAGCTTATATCCGTATC
CTGTCTTTTTTAATTGTTTCGCTCCCATTTTTTTTTTTTGCGACGTTTTT
CCTGTGCCTTCATTGGTCTTATTTATTCTTTTTTTCTCCCCTCTGCTTGA
TCTATTTTTGCACACCTATTTATGTCGTCTCCTATCTTTTTCGTTTTTAT
TTCTATAACCTCTTATTATTTTTTTTATTCCCTATCTTTTCTTTTTTTAT
GTCCTTTATCTACTCTTCTCTTTTCTTCTTTTTTTCTCTCTATTTTCCTT
TTATTCTTCCCTTTTTATCTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_g05.g1 MSMg01no422_g05.g1 CHROMAT_FILE:
MSMg01no422_g05.g1 PHD_FILE: MSMg01no422_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:50 2005
         (362 letters)



>mm_chr5_15112473_15113234
          Length = 762

 Score =  592 bits (306), Expect = e-173
 Identities = 348/362 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctacacatgtgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtccctgttctggtgcttaaccagattctggagaaagctctattgttgttaagacttgag 240
           ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttgttgtttgattatgggatggatccccgggtggggtagtctctggatggtcca 300
           ||||||||| ||  |||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 301 tcctttcgtcttagctttgtctctgtaactccttccatgggtattttgttctctattctg 360
           ||||||| ||||||||||||||| |||||||||||||||| | |||||||| ||||||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctg 560

             
Query: 361 ac 362
           ||
Sbjct: 561 ac 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)