BAC Information

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BAC

Clone NameMSMg01-422I08
Chromosome5 (Build37)
Map Location 13,698,767 - 13,699,029
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I08.T7 (MSMg01no422_i08.b1)MSMg01-422I08.TJ (MSMg01no422_i08.g1)
ACCAG516890AG516891
length731730
length of high quality
(start - end)
480 (63 - 542)263 (319 - 581)
definitionCHROMAT_FILE: MSMg01no422_i08.b1 PHD_FILE: MSMg01no422_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:59 2005CHROMAT_FILE: MSMg01no422_i08.g1 PHD_FILE: MSMg01no422_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTTTGTT
CATTTCCGAGACCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGTTTATTTCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAC
GATAACAGCCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGTTGT
GTGGGCTCATTTCTGGGTCTTCAATTCTATTCCATTGTTCTACTTGTCTG
TCTCTATACCAGTACCACTGCAGTTTTTATCACAATTGCTCTGTAGCAAA
GCTTTTTTTTTTTTCTTGGCGATTCCGCCAAACATTTCTCTATCCCTGAG
TATACACTTTTTTATCCTAGTTTTTTTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCT
ATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGGTGGTTTCTTTTGCCTTGCAGAATCTTTG
CAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTTAAAGCACAAGCCA
TTGCTGGTCTATTTATTAATTTTTTCTCTGTGCCCATATCTTTGAGACTT
TTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGGTTTGACCTTAGTACAAAAAGAGAGGAGTTGTC
AGTATAATTAAGTTAGGACAGAGCAGCTGCATTTTCTCCGTTTTGCTAAC
ACCATGGCTTCCCTGGTTCCATGGTTGCTTGTTTTATTGAGTTCTACTCT
CCTATTCTTTCAAATATTCTCATTTTGTTTAGCTTATTGTGGGATTTTAT
ATTGAGTTTATTTTCCTATGGTATTTGTTATTCAAACAAAACTTCTCTTT
TGTTTTGTTTTCTGCCTTCTGATTCTTGTTTTTGTTTTGCTACCTGCCTC
CTTGGTGGTTGTATCCTTAATATTTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i08.g1 MSMg01no422_i08.g1 CHROMAT_FILE:
MSMg01no422_i08.g1 PHD_FILE: MSMg01no422_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:59 2005
         (263 letters)



>mm_chr5_13698567_13699229
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttttctctgtgcccatatctttgagacttttccctactttctcctctataagtttca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 attttttctctgtgcccatatctttgagacttttccccactttctcctctataagtttca 260

                                                                       
Query: 61  gtgtctctggttttatgtgaagttccttgatccacttaggtttgaccttagtacaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 261 gtgtctctggttttatgtgaagttccttgatccacttaggtttgaccttagtacaaggag 320

                                                                       
Query: 121 agaggagttgtcagtataattaagttaggacagagcagctgcattttctccgttttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggagttgtcagtataattaagttaggacagagcagctgcattttctccgttttgcta 380

                                                                       
Query: 181 acaccatggcttccctggttccatggttgcttgttttattgagttctactctcctattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaccatggcttccctggttccatggttgcttgttttattgagttctactctcctattct 440

                                  
Query: 241 ttcaaatattctcattttgttta 263
           |||||||||||||||||||||||
Sbjct: 441 ttcaaatattctcattttgttta 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)