BAC Information

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BAC

Clone NameMSMg01-422O13
Chromosome5 (Build37)
Map Location 41,673,153 - 41,851,310
singlet/doubletdoublet
Overlap geneLOC208522
Upstream geneLOC100040502
Downstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O13.T7 (MSMg01no422_o13.b1)MSMg01-422O13.TJ (MSMg01no422_o13.g1)
ACCAG517188AG517189
length734711
length of high quality
(start - end)
194 (117 - 310)239 (361 - 599)
definitionCHROMAT_FILE: MSMg01no422_o13.b1 PHD_FILE: MSMg01no422_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:27 2005CHROMAT_FILE: MSMg01no422_o13.g1 PHD_FILE: MSMg01no422_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,673,153 - 41,673,345)(41,851,072 - 41,851,310)
sequence
TTTGCGGCCGCTATAAGAATACTACTTCAAAGAATCCGCGGAATTCCAAA
GTTTTCGTCACCAAATTTACCTGTGTTACATGAACGCTGTATATTTTACA
CAGTAAAGAACCCCAAATACCAGAAAATACCTGCAAACATTTGAGTGGCC
AACTAAGCACTCTCTAAAATGGGTTTAATTTCTAGTTACTCATGGGCATC
TGGAACACACCCTAAGCAGGTCATTGGTTTTGGTTTGGGTTTTCATCCAA
GATATGTAAATTTTCCAGTGAAACTCTTCTTAATTGGTTGATGTGTTTTG
AGCACCATGTGTGTTTCTCCTAGGGAGCAAAGATAGTTTGTTTCCTTGAC
CTTATACCAGCGATTGAAAAGGCACATGTACAGGGAACTGAAATTGGCAT
CTTAGGGGATCCCACTAAGCTCCAAGTACTTCACTGGCCTTTTATATCCC
CACATCTCCGTGATCCAAATGTCAGCACTTGGAAAAGCACGTAGAGGACT
CTTTTGTTCCAGCAGCATGGTCCCTTCCAGGTCAACAACTAAGGACAGTT
CACTGGCTGGATTTATAAATTAATGCTGTTCACCAACCCTCCTGTTTGTG
ACAATTGTATAATGAATAACATGTTTCCACAGGCTCCCTCAATACACTAT
TTTTTTTTTATGTATAACAGAATCAGCATCTCCTACCGCTGTTTATTTGT
TGTTCCTCCACAATAATCTTACATTTTTGCTTCT
GTGGGTAGGCTGGGGGCGCCTGGTTCCGAATCGGGGNGAACNANAGAAGG
TTACAAGACCAGCCATGCCTAANACATAACCAGAGACAAAGGCTTGCTCT
TTCCCTCCTGCCCTTTCATGCAGGAGGGCCAAGTGACCAAGGTCATAATT
AATCACGCGGTGATTTATTTGTCTTGTATAATGCATATTCAATTTAATTT
GATAGTCAGGATGTAGTTATTTCATGGAAAAATTCATCTTGTTGTTTTCT
CTTGGGTCTTCAGGTGGTGTATAATAAATTAAATATTCTCATAAACTTTG
TTGACATTTATGGTTAGTTTCTGACTCCAAAAGGCAAACTAAGAAAATGA
ATGTGAACCGCGTCGTTCCTGTGTTCTCAAAGGAGGGGCCTCCTGGGGCT
GTTTATTGCTAATGGGTGAGCAGAGCCATATTTCAGGCTGGTCACTGCTG
TCCATCTACTACCAAGACCATCTTTAAGGTATGCATTTCAGATGTTTTTT
GATGGAGCATTTATCCATTTAAAACTTGACCTTCAGCACATGCGTGATGA
CACCTCATTAATGTGTTCCTGCTTCACAGACTTCTCTTTGCTCCAGTGAA
AACTGTTTTAATGGGCTTGCTTTTGTGCTTGCGAACACGCTGTTTTTTTT
TTTTATTTCCCTGAAGTGCCTGTCTCCTTCAATTTCCGCGATACAAGAAA
CTGTACTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o13.b1 MSMg01no422_o13.b1 CHROMAT_FILE:
MSMg01no422_o13.b1 PHD_FILE: MSMg01no422_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:27 2005
         (194 letters)



>mm_chr5_41672953_41673546
          Length = 594

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccagaaaatacctgcaaacatttgagtggccaactaagcactctctaaaatgggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccagaaaatacctgcaaacatttgagtggccaactaagcactctctaaaatgggttt 260

                                                                       
Query: 61  aatttctagttactcatgggcatctggaacacaccctaagcaggtcattggttttggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttctagttactcatgggcatctggaacacaccctaagcaggtcattggttttggttt 320

                                                                       
Query: 121 gggttttcatccaagatatgtaaattttccagtgaaactcttcttaattggttgatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttttcatccaagatatgtaaattttccagtgaaactcttcttaattggttgatgtgt 380

                        
Query: 181 tttgagcaccatg 193
           |||||||||||||
Sbjct: 381 tttgagcaccatg 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no422_o13.g1 MSMg01no422_o13.g1 CHROMAT_FILE:
MSMg01no422_o13.g1 PHD_FILE: MSMg01no422_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:27 2005
         (239 letters)



>mm_chr5_41850872_41851510
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtcgttcctgtgttctcaaaggaggggcctcctggggctgtttattgctaatgggtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgtcgttcctgtgttctcaaaggaggggcctcctggggctgtttattgctaatgggtgag 380

                                                                       
Query: 61  cagagccatatttcaggctggtcactgctgtccatctactaccaagaccatctttaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagagccatatttcaggctggtcactgctgtccatctactaccaagaccatctttaaggt 320

                                                                       
Query: 121 atgcatttcagatgttttttgatggagcatttatccatttaaaacttgaccttcagcaca 180
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 atgcatttcagatgtttcttgatggagcatttatccgtttaaaacttgaccttcagcaca 260

                                                                      
Query: 181 tgcgtgatgacacctcattaatgtgttcctgcttcacagacttctctttgctccagtga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcgtgatgacacctcattaatgtgttcctgcttcacagacttctctttgctccagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)