BAC Information

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BAC

Clone NameMSMg01-422P23
Chromosome5 (Build37)
Map Location 144,640,272 - 144,640,756
singlet/doubletsinglet
Overlap geneEif2ak1
Upstream geneFbxl18, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42
Downstream gene4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422P23.T7 (MSMg01no422_p23.b1)MSMg01-422P23.TJ (MSMg01no422_p23.g1)
ACCAG517256AG517257
length719739
length of high quality
(start - end)
485 (69 - 553)34 (120 - 153)
definitionCHROMAT_FILE: MSMg01no422_p23.b1 PHD_FILE: MSMg01no422_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:34 2005CHROMAT_FILE: MSMg01no422_p23.g1 PHD_FILE: MSMg01no422_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTCCTGTCACTAATACGACTCACTATATTTCGAGGATCCGCGGAATTC
CTTTAGTCTGTCGAATTAGATGGAATTTAATGTTTTTTCTTTTCTTTTAG
GTCCGGAACAAATTAGATGGTCAGCATTATGCAATTAAGAAAATCCTGAT
TAAGAGCGCAACTAAAACAGATTGTATGAAGGTATGACTCTGGACGGGCT
TGTGTGCAGTAGCACGTGCCATGGAGTTGTGTGTGAGGCTGCAGACACCA
CGTCCTTGTGGGGGTTGTTCTTGAGGCACCGCCCACCTTGGCTTTACACA
CAGGGTCTCTTGCTATACTGTTTTTGCAGGACTGGGTGGCCTGTGAGCCC
CAGAGGTCCTTGTCTCAGGCTTCTTCCTCAGTGTTAAGTCACGGGCATCA
CCAGATGTGACATGCCCAGTCTTTTTTCCAACCACCAACCTCAAGTTTTC
ATGCTTGACAAATTGAGCACCTGACTATCCAAGCTGTCTCCCTAACTCTG
AAGGAAGGACGGGAGGGTTTCAGAAAGTGATTTGAGCTGGGCCTAGCATG
GTGATGCTAAGTGGAGGTAGGTGAAGGGGAACCCCACAGAGTGTGGAGCT
CTCTCCCAGACCCGGATTAGACACCAGTCACACCCACACTCCTAATATTC
CAGATACCCTTTATGAAGCAGGCAACAAAGCCAAGCGGCTGCCCTCTGTT
TCATTATAACCTACTACAT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCTCCTGAGACCTTGACTGATGTTTGTGGCTG
TCAGATACATGTTTTTCCAGGCGGGGAGAGAGGAAGAGGGGAGGGGGAGG
GGACAGTTAGGATGGGGGGGGNGNNNNNNNNNNGGGGNGGGGGGGGGNGG
GNGGNNGGNGNGNNGGTTTGGGGGGTGNGGGGGGNGGGGGGGGTTTTTTT
TGTGTTNTGTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTGGNGGGGG
GGGGTTTTTTTTTTTGGGNCNGGGNGNGGGGGGGGGNGGGGGGTTTTTTT
TTTCCCTTTCTTTTTCTCTCTCCTCCTCCTTTTTCTTTCCCTCTTTTTCC
CCCCCCTCCTTTTCTTCTTTCTTTCTTTTTCTTCTCTTCTTTCCTTTCTC
TTTTTTCTTTTTTTCTTCTCTTCTTTTTTCTTCCTTTCTTTTTTCTCTTC
CCTTTCTTTTCTTTTTCTTTTTCTCCTTCTTTCTCCTTTTTTTCTCTTCT
CCTTTTTTTTTTCTTTTTTTTCCCTTTTCTCTTTTCTCTCTCTCTTCTTG
TTTTCTTTTCTTTTTTTCTTCTTTCTTCTTTTTTCTTCTTCCTTTTTTCC
CTTTTTCTTTTTCTCTTCCTCCTCCCTTTTTCTTTCTTTTTGTTTCCCCC
TCTCTCCTCTTCCTCCCCTTTTTCCTCCCTTCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_p23.b1 MSMg01no422_p23.b1 CHROMAT_FILE:
MSMg01no422_p23.b1 PHD_FILE: MSMg01no422_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:34 2005
         (485 letters)



>mm_chr5_144640072_144640956
          Length = 885

 Score =  791 bits (409), Expect = 0.0
 Identities = 466/489 (95%), Gaps = 8/489 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggaatttaatgttttttcttttcttttaggtccggaacaaattagatggtcagcatt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatggaatttaatgctttttcttttcttttaggtccggaacaaattagatggtcagcatt 260

                                                                       
Query: 61  atgcaattaagaaaatcctgattaagagcgcaactaaaacagattgtatgaaggtatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaattaagaaaatcctgattaagagcgcaactaaaacagattgtatgaaggtatgac 320

                                                                       
Query: 121 tctggacgggcttgtgtgcagtagcacgtgccatggagttgtgtgtgaggctgcagacac 180
           ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tctggacgggcatgcgtgcagtagcacgtgccgtggagttgtgtgtgaggctgcagacac 380

                                                                       
Query: 181 cacgtccttgtgggggttgttcttgaggcaccgcccaccttggctttacacacagggtct 240
            | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtccttgtgggggttgttcctgaggcaccgcccaccttggctttacacacagggtct 440

                                                                       
Query: 241 cttgctatactg----tttttgcaggactgggtggcctgtgagccccagaggtccttgtc 296
           ||||||||||||    |    ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 441 cttgctatactggggct----gcaggactgggtggcctgtgacccccaggggtccttgtc 496

                                                                       
Query: 297 tcaggcttcttcctcagtgttaagtcacgggcatcaccagatgtgacatgcccagtcttt 356
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 497 tcaggcttcttcctcagtgttaggtcacgggcatcacgagatgtgacatgcccagtcttt 556

                                                                       
Query: 357 tttccaaccaccaacctcaagttttcatgcttgacaaattgagcacctgactatccaagc 416
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 tttccaaccaccaacctcaagttttcatgcttggcaaattgagcacctgactatccaagc 616

                                                                       
Query: 417 tgtctccctaactctgaaggaaggacgggagggtttcagaaagtgatttgagctgggcct 476
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 617 tgtctccctaactctgaaggaaggacgggagggtttcagaaagcgatttgaactgggcct 676

                    
Query: 477 agcatggtg 485
            ||||||||
Sbjct: 677 ggcatggtg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)