XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTATG
CCGACCAGGTTGTCCTCAAACTCAGAGAACCACCTGTGTCTTACTTAGGG
ATTTATATCTGTGAGCAGACACCATGACCAAGGAAACTCTTATAAGGACA
ACATTAATTGAGGCTGGCTTACAGGTTTAGAGGGTCAGTCCATTATCATC
AAGGTGGGAGCATAGCAGTGTCCAGGCAGGCAGACATGGTACAGGAGGAG
CTGAGAATTCTACATCTTCCTCTGAAGGCTTCTAGCAGAATACTTACTGG
CTTCCATGCAGCTAGGACAAGGGTCTTAAAGCCCACATCCACAGTGACAC
ATCTACTCCAACAGGGCCACACCTCCCAATTGTGCCACTCCCTGGGCCGA
GCATATGCAAACCATTACAACCTGCCTCTTGTACACCATCATGTCCAGCC
TGCTCTGTTAATGAAAAGTGGAGTTTGCTTTTTATAATTAGCATGCATCA
CACATATAATGGCTTCTGTGACATTTTTATACATATATGATACCTTTTGA
TCATGTTTACCTCTGCTCTCATCCTAGNCCACTCCTGCTGAACCTTCCTT
TTCTCAAATTATGTCCCCCCCACACCTTCAAAGTCTTTTTGTTAGTTGGG
GGGCGACATTTAAATCCGATCAGGGATGCTTTACTGTATCAAAGCTGATG
GGGTTTTACCCCACTTTTTCTTGTTTTTATTCCTCTTTATCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGTGGGGAGGGGTAGGCTAATTGTTAATCTTGTT
CTGGCAGCTGCAAGCTTAGTCATTTTAACTGTTAAAACTATGTTTCTACA
TTTGTTTAGTCAGCCAGCTTCTTTATCTGGCTCTGTACTTGGCCTGCTAG
TACATTTTGGAAAGTCCTTTCCGAAGGCAAAAGGTACTGGGTGTCTTGAC
TTTATTTTGGATATCACAGGTTCATTTCCCAGTACCCTGTGGCTTCTTAC
AACTATCTGTAACTCCAGTTACTGTTGTGCCCTGAGTTCACAGGAAACCC
AGATGAGCCCAAAAATTGCAAAGTCCACTGCAACTTGCAAAAGAGTCTTT
TATTTTCAAGCTTGAACCCGGTTCACTCAGCTAGCACTCACTGCGTGAAT
GCTGGCAAGTGACCCTGAGTCAAGAAAACGTTGGGTTTATATGCAGTATA
GGAATAGTGTGAATATTCACAGAAAAGGGGAGTAGAGGGTAGAATAGTAC
TGAAGCAGGAGGTGGGTTAATGCCCGTCTGTTCTATGACTAATTTTTATG
AACCGCCTTATTGTCTGTTACCTGCACCTCCCTTTCTTTTTTATTTTTCC
CCGTGCTCCCCTGTATCTTTTTATTTCCTCTACGCCCTTTTAACCCCCCT
CTTTCTTTTTTCCCCTACTCCTCCCTTCTTTTCTT

Query= MSMg01no423_l11.b1 MSMg01no423_l11.b1 CHROMAT_FILE:
MSMg01no423_l11.b1 PHD_FILE: MSMg01no423_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:28 2005
         (535 letters)



>mm_chr5_28054435_28055370
          Length = 936

 Score =  938 bits (485), Expect = 0.0
 Identities = 521/533 (97%), Gaps = 2/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtatgccgaccaggttgtcctcaaactcagagaaccacctgtgtcttactta 63
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 ggaattcagtatgcagaccaggttgtcctcaaactcaaagaaccacctgtgtcttactta 264

                                                                       
Query: 64  gggatttatatctgtgagcagacaccatgaccaaggaaactcttataaggacaacattaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggatttatatctgtgagcagacaccatgaccaaggaaactcttataaggacaacattaa 324

                                                                       
Query: 124 ttgaggctggcttacaggtttagagggtcagtccattatcatcaaggtgggagcatagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgaggctggcttacaggtttagagggtcagtccattatcatcaaggtgggagcatagca 384

                                                                       
Query: 184 gtgtccaggcaggcagacatggtacaggaggagctgagaattctacatcttcctctgaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtccaggcaggcagacatggtacaggaggagctgagaattctacatcttcctctgaag 444

                                                                       
Query: 244 gcttctagcagaatacttactggcttccatgcagctaggacaagggtcttaaagcccaca 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 gcttctagcagaatacttactggcttccaggcagctaggacaagggtcttaaagcccaca 504

                                                                       
Query: 304 tccacagtgacacatctactccaacagggccacacctcccaattgtgccactccctgggc 363
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 505 tccacagtgacacatctactccaacagggccatacctcc-aattgtgccactccctgggc 563

                                                                       
Query: 364 cgagcatatgcaaaccattacaacctgcctcttgtacaccatcatgtccagcctgctctg 423
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 cgagaatatgcaaaccattacaacctgcctcttatacaccatcatgtccagcctgctctg 623

                                                                       
Query: 424 ttaatgaaaagtggagtttgctttttataattagcatgcatcacacata-taatggcttc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 624 ttaatgaaaagtggagtttgctttttataattagcatgcatcacacataataatggctgc 683

                                                                
Query: 483 tgtgacatttttatacatatatgataccttttgatcatgtttacctctgctct 535
           |||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgacatatatatatatatatgataccttttgatcatgtttacctctgctct 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space:   486150
Effective search space used:   486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)