BAC Information

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BAC

Clone NameMSMg01-424C12
Chromosome5 (Build37)
Map Location 76,865,532 - 76,931,816
singlet/doubletdoublet
Overlap geneLOC665065, EG639545
Upstream geneLOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu
Downstream geneExoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424C12.T7 (MSMg01no424_c12.b1)MSMg01-424C12.TJ (MSMg01no424_c12.g1)
ACCAG518143AG518144
length736751
length of high quality
(start - end)		686 (45 - 730)629 (84 - 712)
definitionCHROMAT_FILE: MSMg01no424_c12.b1 PHD_FILE: MSMg01no424_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:02 2005CHROMAT_FILE: MSMg01no424_c12.g1 PHD_FILE: MSMg01no424_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,865,532 - 76,866,214)(76,931,294 - 76,931,816)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATTTAACTCTCTGCAAATCATTCACTATACTATCCTGTTTCCCA
CCTTGGACTAACTACTTGGATGTTACTACCCAACATTTTTAAAGAAAATC
AGGCTATAGACTGCAGGAGACCATGAACCAATGAGTGGCACCCACATCCA
GATCATTCCACCTCTTACGTACTTTTTGGAGACAAATTTTCACAAAACAT
GTAGGTCAGATTAATAACAGGCCATGTGCTACTGAGACTTAATGGCTGTT
CTCATAGGTCCATTTGCTTCACAGACTCAACATGCTCTTATCCAGGAATC
TAGATTAAAAAGAAGAAACAAAGCTGAACTATTTTCAATGATCAAGTTTC
TAAGCAAACAACAAAACAAGCCAGAAAGTGACCACTGGAAACTGGCCCCC
TGTCTTTCAGCAGGACTTCTGATGAGCCCCGACTCAGTTTCAGGAACAAC
CCTTAAATAAGGTGTTCAAAATGCAAAAGGAAGGTTTCTGGTATTCCCAG
TGGCTACACTCAAAGTCTATCACAGTCCTTGGTACCCACTAAAGGCAAAC
ATGGCTGAAACTCCTCTGTGGCCTGGCCAGCACAGAGCACCTGCCAAAAC
AGACACACCTCCATGAAACTACTTTGCAAAACGCAGAGTGCTGTTGACAT
CTGAGGCTTGCCGATGTCCTCTGACTAACTTCACTN

NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAGTGCTGCGGGT
CCTTAAGTGATGAGAGAGGCAGAAATGGTGAGCTTCCCTTCTTTATCTGC
TTCGCCATCGAAGACCAGGATCTTCAGAGTGAAAAAGGGAGAATCAAGAA
TTTAGCAATGAAATTGGAGTCCAAGAGAAGTAGGGAAGAAACAGAACACA
GTTAACAGCTTCCAATGGATCGAGGCTGACAGGCTTCGTTCATATGTCCC
CAGGGGCTGGCCAAGCTCGGCAGATATAATTATGACATAAGTAGTGTTTG
AGAATGTGAGAGGGAAAAGCCAAAAGACAAATGGGCTAACAGTGACCGAG
GATGGCTGATTTCTACCCCATGGATTGGTAAACATGTGATAGATGAGATA
CACCTAACAGTCAATGCAAGATAAACATTTGGTAAATGCAGAAAAGTATT
ATGAAGAAAAAAATTGTGCCACTATCACTCAGGAAATGATTACTAAAGTT
TGTCTCATATTTAAATGCATAGACTCATATGTATACTTACATGTAAGAGA
GAAGGTTTAACATTTTGTATTGGGTGCAAATTAATCTAACTTGTAGACAT
GCCATAATATACTTAATCAGTTTTAAAGTCTTCAACATTTATGTAAAATA
TATTTTCAGAATAATGTTAAGTACTTAGGTCACAAAACAATGGTATATCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_c12.b1 MSMg01no424_c12.b1 CHROMAT_FILE:
MSMg01no424_c12.b1 PHD_FILE: MSMg01no424_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:02 2005
         (686 letters)



>mm_chr5_76865329_76866414
          Length = 1086

 Score = 1251 bits (647), Expect = 0.0
 Identities = 674/683 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaatttaactctctgcaaatcattcactatactatcctgtttcccaccttgga 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatctaactctctgcaaatcattcactatactatcctgtttcccaccttgga 263

                                                                       
Query: 64  ctaactacttggatgttactacccaacatttttaaagaaaatcaggctatagactgcagg 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 ctaactacttggatgttactacccaacatttttaaagaaaatcaggctgtagactgcagg 323

                                                                       
Query: 124 agaccatgaaccaatgagtggcacccacatccagatcattccacctcttacgtacttttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 324 agaccatgaaccaatgagtggcacccacatccagatcattccacctcttacatactttct 383

                                                                       
Query: 184 ggagacaaattttcacaaaacatgtaggtcagattaataacaggccatgtgctactgaga 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagacaagttttcacaaaacatgtaggtcagattaataacaggccatgtgctactgaga 443

                                                                       
Query: 244 cttaatggctgttctcataggtccatttgcttcacagactcaacatgctcttatccagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttaatggctgttctcataggtccatttgcttcacagactcaacatgctcttatccagga 503

                                                                       
Query: 304 atctagattaaaaagaagaaacaaagctgaactattttcaatgatcaagtttctaagcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctagattaaaaagaagaaacaaagctgaactattttcaatgatcaagtttctaagcaa 563

                                                                       
Query: 364 acaacaaaacaagccagaaagtgaccactggaaactggccccctgtctttcagcaggact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaacaaaacaagccagaaagtgaccactggaaactggccccctgtctttcagcaggact 623

                                                                       
Query: 424 tctgatgagccccgactcagtttcaggaacaacccttaaataaggtgttcaaaatgcaaa 483
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgatgagtcctgactcagtttcaggaacaacccttaaataaggtgttcaaaatgcaaa 683

                                                                       
Query: 484 aggaaggtttctggtattcccagtggctacactcaaagtctatcacagtccttggtaccc 543
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggaaggtttcttgtattcccagtggctacactcaaagtctatcacagtccttggtaccc 743

                                                                       
Query: 544 actaaaggcaaacatggctgaaactcctctgtggcctggccagcacagagcacctgccaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 744 actaaaggcaaacatggctgaaactcctctgtggcctggccagcacagagcacctgccat 803

                                                                       
Query: 604 aacagacacacctccatgaaactactttgcaaaacgcagagtgctgttgacatctgaggc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aacagacacacctccatgaaactactttgcaaaacgcagagtgctgttgacatctgaggc 863

                                  
Query: 664 ttgccgatgtcctctgactaact 686
           |||||||||||||||||||||||
Sbjct: 864 ttgccgatgtcctctgactaact 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_c12.g1 MSMg01no424_c12.g1 CHROMAT_FILE:
MSMg01no424_c12.g1 PHD_FILE: MSMg01no424_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:02 2005
         (629 letters)



>mm_chr5_76930788_76931816
          Length = 1029

 Score =  996 bits (515), Expect = 0.0
 Identities = 521/523 (99%)
 Strand = Plus / Minus

                                                                        
Query: 106  gagaatcaagaatttagcaatgaaattggagtccaagagaagtagggaagaaacagaaca 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gagaatcaagaatttagcaatgaaattggagtccaagagaagtagggaagaaacagaaca 970

                                                                        
Query: 166  cagttaacagcttccaatggatcgaggctgacaggcttcgttcatatgtccccaggggct 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  cagttaacagcttccaatggatcgaggctgacaggcttcgttcatatgtccccaggggct 910

                                                                        
Query: 226  ggccaagctcggcagatataattatgacataagtagtgtttgagaatgtgagagggaaaa 285
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  ggccaagctcggcagaaataattatgacataagtagtgtttgagaatgtgagagggaaaa 850

                                                                        
Query: 286  gccaaaagacaaatgggctaacagtgaccgaggatggctgatttctaccccatggattgg 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  gccaaaagacaaatgggctaacagtgaccgaggatggctgatttctaccccatggattgg 790

                                                                        
Query: 346  taaacatgtgatagatgagatacacctaacagtcaatgcaagataaacatttggtaaatg 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  taaacatgtgatagatgagatacacctaacagtcaatgcaagataaacatttggtaaatg 730

                                                                        
Query: 406  cagaaaagtattatgaagaaaaaaattgtgccactatcactcaggaaatgattactaaag 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  cagaaaagtattatgaagaaaaaaattgtgccactatcactcaggaaatgattactaaag 670

                                                                        
Query: 466  tttgtctcatatttaaatgcatagactcatatgtatacttacatgtaagagagaaggttt 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  tttgtctcatatttaaatgcatagactcatatgtatacttacatgtaagagagaaggttt 610

                                                                        
Query: 526  aacattttgtattgggtgcaaattaatctaacttgtagacatgccataatatacttaatc 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  aacattttgtattgggtgcaaattaatctaacttgtagacatgccataatatacttaatc 550

                                                       
Query: 586  agttttaaagtcttcaacatttatgtaaaatatattttcagaa 628
            ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549  agttttaaagtcttcaacatttaggtaaaatatattttcagaa 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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