XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
AGACTTTCCGGAAGCAGAGATCTGTTCCCCTTCAGTAGCTACAGAATGTA
AGGTGAAGCCAACATTGTCTCTTGTGGTAATCAAACTCTTCATTTTAGTG
TCTCTAACCTCAGCTGTAGTGGAGATATGAGACAGGCAGGAACTCCTGTA
ACATTTGAACTCTGCAGCTGCCCCAGTTTCTGAATTACAGCCTCCAGTGT
ATGGGAGCTGATGATGGTCCCTGTCTTGGGCTCCTCTGATCCTTTCAATA
GCTTTGTCACAGTTTATGGCCTGCTCTGACTGCCCTTCTGCTTAAGGGAC
GCAGAATGGCTTCTGTTCATTGCACTGAATCCTGCTCAGTAGAAGGAATT
TGAAAGAAGATCAGAATTGCACCTAATGAAGAAGGAGAAAGGGCGGATAC
TATCCAAAGCAAGTAGAATGGGAAACAAACAAACATAATACTAAGTATCA
AAGTAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGAAGGGAGGGG
GTGGGTCGGTAGGAAATGAGACTGGCAAACTAAAAATAGGAGGGATTATG
GAGTGAGCTGTTTGCTTTTGTGCAGCTGACATTAGAAGATGTTGAGAGAC
CTAAGCCAGGGGATGGTGTTAAGGCTATATTCTTTGTACCCCATTTTTGG
GCTTTATGAGTGACGACTTGGAAGCCCGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGCCCATGATCTTACTCAAGGACATTTCTAG
GACTGTTGGAACACTGGTGGAAGGCTTAAGCCATGTCAGAATTCAATTTT
AAAAAGCACTTATAATAGGAAAATACTGAAAGAGAGCACATGGATCCATA
CACTAGACTAACTCGGGAATGGAACTCGGGAATGAAAAATTACTGTATGG
GTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTAGAAACTCTTTTGCC
TCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAG
CATAGCAACTAAGGATACTGAACATTTCTTTAGGTATTTTCCAGGCATTC
AATATTCCCCAGTTAATAATTCTTTGTTTAGCTCTGTACTCCATTTTGTA
ATTGGGTAATTTGGTTTTCTGGAGTCTAACTTTTGGTTTTTTGGAGTTCT
TTGTATATTATCACTCTATGAGATGTAGGGTTAGTAGAGATCTTTCCCAA
TCTGTAGGATGGCATTTTGTCTAATTGACAGTCTCCTTTGCATTACAGAA
GCTTTTCAGTTTCATGAAGTTCCTTGGGTCAATTGTTGATCTTATAACCT
GGACCCTTATTGTTCTATTCAAAAAATTTCCCCGCGGGAAAAATGTTCCA
AGGCAATTTCCAACTTTCTCCTCATTAAAAAACCCCCCCAATTGGGGT

Query= MSMg01no425_g14.b1 MSMg01no425_g14.b1 CHROMAT_FILE:
MSMg01no425_g14.b1 PHD_FILE: MSMg01no425_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:37 2005
         (570 letters)



>mm_chr5_5916213_5917179
          Length = 967

 Score =  878 bits (454), Expect = 0.0
 Identities = 519/556 (93%), Gaps = 26/556 (4%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggaagcagagatctgttccccttcagtagctacagaatgtaaggtgaagccaacattgtc 82
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaagcagagatctgttccccttcattagctacagaatgtaaggtgaagccaacattgtc 274

                                                                       
Query: 83  tcttgtggtaatcaaactcttcattttagtgtctctaacctcagctgtagtggagatatg 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcttgtggtaatcaaactcttcattttagtgtctctaacctcagctgtagtggagatatg 334

                                                                       
Query: 143 agacaggcaggaactcctgtaacatttgaactctgca--------gctgccccagtttct 194
           ||||||||||||||||||||||||||||| |||||||        |||||||||||||||
Sbjct: 335 agacaggcaggaactcctgtaacatttgatctctgcatgtcagcagctgccccagtttct 394

                                                                       
Query: 195 gaattacagcctccagtgtatgggagctgatgatggtccctgtcttgggctcctctgatc 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaattacagcctccagtgtatgggagctgatgatggtccctgtcttgggctcctctgatc 454

                                                                       
Query: 255 ctttcaatagctttgtcacagtttatggcctgctctgactgcccttctgcttaagggacg 314
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctttcaatagctttgtcacagttcatggcctgctctgactgcccttctgcttaagggacg 514

                                                                       
Query: 315 cagaatggcttctgttcattgcactgaatcctgctcagtagaaggaatttgaaagaagat 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 515 cagaatggcttctgttcattgcactgaatcctgctcagtagaaggaatttgaaagaa--- 571

                                                                       
Query: 375 cagaattgcacctaatgaagaaggagaaagggcggatactatccaaagcaagtagaatgg 434
           ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 572 cagaattgcacctaatggagaaggagaaagggcagatactattcaaagcaagtagaatgg 631

                                                                       
Query: 435 gaaacaaacaaacataatactaagtatcaaagtaagtctttttttttttttttttttttt 494
           |||||||||||||||||||||||| |||||||||| ||||||||||||||          
Sbjct: 632 gaaacaaacaaacataatactaagcatcaaagtaactctttttttttttt---------- 681

                                                                       
Query: 495 ttttgctcgaagggagggggtgggtcggtaggaaatgagactggcaaactaaaaatagga 554
                ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 -----ctcgatgggagggggtgggttggtaggaaatgagactggcaaactaaaaatagga 736

                           
Query: 555 gggattatggagtgag 570
           ||||||||| ||||||
Sbjct: 737 gggattatgaagtgag 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 967
Length adjustment: 10
Effective length of query: 560
Effective length of database: 957
Effective search space:   535920
Effective search space used:   535920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)