BAC Information

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BAC

Clone NameMSMg01-425H12
Chromosome5 (Build37)
Map Location 79,003,429 - 79,003,824
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669227, LOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H12.T7 (MSMg01no425_h12.b1)MSMg01-425H12.TJ (MSMg01no425_h12.g1)
ACCAG519144AG519145
length763761
length of high quality
(start - end)		506 (37 - 542)463 (67 - 529)
definitionCHROMAT_FILE: MSMg01no425_h12.b1 PHD_FILE: MSMg01no425_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:41 2005CHROMAT_FILE: MSMg01no425_h12.g1 PHD_FILE: MSMg01no425_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
ACCCTACAAACAGCTTCATTGCAGTAGCTAGATATAAAATTAACTCTAAC
AAATCAGTGGCCTTTCTCTACACAAAGGATAAACAAGCACAGAAAGAAAT
TAAGGCAACAACACCCTTCACAATAGTCACAAATAATATAAAATACCTTG
GTGTGATTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAG
TATCTGAAGAAAGAAATTGAAGAAGTTCTCAGAAGATGGAAAGATCTCCC
ATGATCATGGATTGGCAGGATCAACATTGTAAAAATGGAGATCCTACCAA
AAGCAATCTACAGATTCAATGCAATCCTCATCAAAATTCCAACTCAATTC
TTCAACGAAAATTGGACATAGTACTATCGGAAGATCAAGCAATACCTTTC
CTGGGCATATACCCAGAAGATGTTCCAACTGGTATTAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAACCAGAAGTTGTAAAGAAC
CCAAATGTCCCTCAACAGAAATGGATTCAATGTACCCAATGTACCCAATG
GAGGACTACTCAGCTATTAAAAACATGAACTAATGAAATTCCTGGGCAAA
AGGAGGGATCTGGAGGTATCATCCTGAGGGAGGAAAACCCCCAAAAAAAC
CCTTTGAATGGCCCCCTTATAAGGGAAATAATCCCCAAAAAATAAAATCC
CTGAACCATTTGG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAATGTCCAGTAGCCCAAGGCTTTATTTTGCTA
TTTAGAAGTTCATGAGTTGTGTTTTTAATTAAATTATATAACACTTAAAG
TTAAGAAATTTGTATTGCATGTATTTTGCATTATTCAGAGAATTTAGGAT
GATATTGAAATAGATGGCATATTCTAATTTTTTTACTACTTTTATTTTTT
AACAGACCAGTTACTACCTTCCTGCCGTTCTGCTCACTATCAGTTCCTCA
TCCCATTCCTCCTTCCCATATATCCAAGAGGATTCTTAATACTGCTTAGT
GAATTAAATTTAGATAAACAGAATTGAATTAATGAAAGATATTTTTTCAA
ATATTTTGCCTTTTGCATTTGGCAAATAAGATATGGATATACTGGTTAGA
AGTAGATATCAACTAAAAATAATTGGATCCATTTGTAATCTTTCTACTCT
TGAATTTAGAANATGAGGCTCTGGAAATCAGTCTGGCGGTTCCTCAGAAT
ATTGGACACATGCTCCACTATGTTCACAGCAACCTTATTTTATATAATCA
GAAGCTGGAAAGAACCCAGTTTTTCTTTCACAGAAGAATGGATACAGAAA
ATGTGGGACTTTTACCCATGGGGAACAAACCCGTTGTTAAAAAAATACCT
TTCTTAATTTTTTGCCAAAGGATGGAACTAAAAAAAAATCCCTGAGGGGG
GGAACCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h12.g1 MSMg01no425_h12.g1 CHROMAT_FILE:
MSMg01no425_h12.g1 PHD_FILE: MSMg01no425_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:41 2005
         (463 letters)



>mm_chr5_79002962_79003824
          Length = 863

 Score =  721 bits (373), Expect = 0.0
 Identities = 390/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 69  tatataacacttaaagttaagaaatttgtattgcatgtattttgcattattcagagaatt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tatataacacttaaagttaagaaatttgtattgcatgtattttgcattattcagagaatt 804

                                                                       
Query: 129 taggatgatattgaaatagatggcatattctaa-tttttttactacttttattttttaac 187
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 803 taggatgatattgaaatagattgcatattctaattttttttactacttttattttttaac 744

                                                                       
Query: 188 agaccagttactaccttcctgccgttctgctcactatcagttcctcatcccattcctcct 247
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaccagtcactaccttcctgccattctgctcactatcagttcctcatcccattcctcct 684

                                                                       
Query: 248 tcccatatatccaagaggattcttaatactgcttagtgaattaaatttagataaacagaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcccatatatccaagaggattcttaatactgcttagtgaattaaatttagataaacagaa 624

                                                                       
Query: 308 ttgaattaatgaaagatattttttcaaatattttgccttttgcatttggcaaataagata 367
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgaattaataaaagatattttttcaaatattttgccttttgcatttggcaaataagata 564

                                                                       
Query: 368 tggatatactggttagaagtagatatcaactaaaaataattggatccatttgtaatcttt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggatatactggttagaagtagatatcaactaaaaataattggatccatttgtaatcttt 504

                                               
Query: 428 ctactcttgaatttagaanatgaggctctggaaatc 463
           |||||||||||||||||| |||||||||||||||||
Sbjct: 503 ctactcttgaatttagaaaatgaggctctggaaatc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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