BAC Information

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BAC

Clone NameMSMg01-426K20
Chromosome5 (Build37)
Map Location 19,755,455 - 19,916,913
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426K20.T7 (MSMg01no426_k20.b1)MSMg01-426K20.TJ (MSMg01no426_k20.g1)
ACCAG520060AG520061
length789824
length of high quality
(start - end)		413 (54 - 466)268 (75 - 342)
definitionCHROMAT_FILE: MSMg01no426_k20.b1 PHD_FILE: MSMg01no426_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:18 2005CHROMAT_FILE: MSMg01no426_k20.g1 PHD_FILE: MSMg01no426_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,916,501 - 19,916,913)(19,755,455 - 19,755,705)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNG
ATTCAGTGAAGATGACGAAAATCTGACACCATTCTATTGATAATGTGCGC
AGAATTTACATTGTGAGTCCAGATAATGCAGCTGCTGCTAATAACTCCCT
GTGATTTTACAAAAGATGTAGGACAACAGGTGAGCAATCGTGGAGTCTGG
ACCCTGAATGGACCAGCCTTGAATCCTAGAGCTCTGCCCATTCCTTTTGT
TTGTTGTTGTTTGTTCTTTGTTTCTTATGGACTACCCTCGTTCTACAGCC
CATGCTGGTATAGACTTTTCTACATTGCCAGGCTGGCCAAGTACTCAAGG
CCTTTGGTCTAGCCTTCAAAGTGTTAGGATTCCAGACACAAGTCACCACA
TTTGGCTCCGCGTGTTCTTTTCTTTGGTTGTTAGCTGTCTGGCTAGTATT
TTTCCCACTCTTGCTTCTCCATGCTTTTCCCAGGAGCACTGATTTAACTT
TCTTTAAATAGATTTCAGATACTTTGTCAAAGTCCACATATGAAAAACTT
GGGTTATTTATTAATTTCCCCCGAACCGAAAGGATTCTTAATTTTCCTTA
AAAAATGGAAGCCCCTTTGGGGGTGAAAGGTGGTTGGGAAAAAAATTGGT
TATTGTTCCTCCCCCCCCCCCCCCCCTTATTGTTGTTTTATAAATCTTCT
TTTTTTTGGTCGAGTGGTCATCTCCCTTAACTCTTGTACACAACCCTTTC
TCCCTATTATTTTTTCTTTTTTCAGTAAATCTTTTTCCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGGGTACAAACTAGCATGAGCTCA
CCTCGCTACATGCTAGGCAGCACGTTTCTGTGATCAAGTATGCAAATACT
GGGATGGGCTTCTCATCATGGCCAGCTCTGAAGACCTTGACAAATTTCAT
TTCCTGGCTTCTGTGTAGCTGGGATACTAGAGTTCTGGGGAAAGGAGGGG
GCACACACACACGCCCATGCACACACACACACACACACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTTTTNTT
NTTTTTTGGTTGTTTTTTGGGTTTGGTTGGTGTTGGTGTGTTTTGTTTTT
TTTTTTTTGTTTTGTTTTCCGTTTTCTTGGTTTGTTTGGANGTCTTTTTT
TGTTTCTTTTCCCTCCTCTTTAACCATTTTATATTACATCCTCATATCTT
ATTCTCCTTCTCTTCCTTCCCTCTTTTTCCTTCCGTTTCTTCCCNGTCCT
CTCTTTTTTCGCTCCTCTTCTTCCCCTTATTTCTCGCTTTCCCTATTTAT
TTCCTCTCCTTTGCTTCTTTGCCCTCATTCCCTATTCCTACTCTTCCCCT
TTTTCTATCTTCCTGTTTATCGTTTCCTCTTTCCCTTCCTCTTTTCCTCG
CCCCTTGGTTCTTATGCTTTTATCTTTTACCCTCTTCCCCTTTTACCCTC
TTGTTCCTCGTTCCTTTCCTCGTTTCATTACCCTTCCCCACGTTTTCTCT
ACCCCTTCTATTCTTCTTTCTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_k20.b1 MSMg01no426_k20.b1 CHROMAT_FILE:
MSMg01no426_k20.b1 PHD_FILE: MSMg01no426_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
         (413 letters)



>mm_chr5_19916481_19917293
          Length = 813

 Score =  737 bits (381), Expect = 0.0
 Identities = 405/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgaagatgacgaaaatctgacaccattctattgataatgtgcgcagaatttacattg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagtgaagatgaagaaaatctgacaccattctattgataatgtgcgcagaatttacattg 374

                                                                       
Query: 61  tgagtccagataatgcagctgctgctaataactccctgtgattttacaaaagatgtagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgagtccagataatgcagctgctgctaataactccctgtgattttacaaaagatgtagga 314

                                                                       
Query: 121 caacaggtgagcaatcgtggagtctggaccctgaatggaccagccttgaatcctagagct 180
           |||||||||||||| |||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 313 caacaggtgagcaagcgtggagtttgggccctgaatggaccagccttgaatcctggagct 254

                                                                       
Query: 181 ctgcccattccttttgtttgttgttgtttgttctttgtttcttatggactaccctcgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgcccattccttttgtttgttgttgtttgttctttgtttcttatggactaccctcgttc 194

                                                                       
Query: 241 tacagcccatgctggtatagacttttctacattgccaggctggccaagtactcaaggcct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tacagcccaggctggtatagacttttctacattgccaggctggccaagtactcaaggcct 134

                                                                       
Query: 301 ttggtctagccttcaaagtgttaggattccagacacaagtcaccacatttggctccgcgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 133 ttggtctagccttcaaagtgttaggattccagacacaagtcaccacatttggctccacgt 74

                                                                
Query: 361 gttcttttctttggttgttagctgtctggctagtatttttcccactcttgctt 413
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 73  gttcttttctttggttgttagctgtctggctagtatgtttcccactcttgctt 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_k20.g1 MSMg01no426_k20.g1 CHROMAT_FILE:
MSMg01no426_k20.g1 PHD_FILE: MSMg01no426_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
         (268 letters)



>mm_chr5_19755255_19755922
          Length = 668

 Score =  455 bits (235), Expect = e-132
 Identities = 247/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgggtacaaactagcatgagctcacctcgctacatgctaggcagcacgtttctgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggtacaaactagcatgagctcacctcgctacatgctaggcagcacgtttctgtgat 260

                                                                       
Query: 61  caagtatgcaaatactgggatgggcttctcatcatggccagctctgaagaccttgacaaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtatgcaaatactgggacgggcttctcatcatggccagctctgaagaccttgacaaa 320

                                                                       
Query: 121 tttcatttcctggcttctgtgtagctgggatactagagttctggggaaaggagggggcac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttcatttcctggcttctgtgtagctgggatactagagttctggggaaaggacggggcac 380

                                                                       
Query: 181 acacacacgcccatgcacacacacacacacacacagagagagagagagagagagagagag 240
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 acacacacacccatgcacacacacacacacacacacagagagagagagagagagagagag 440

                      
Query: 241 agagagagaga 251
           |||||||||||
Sbjct: 441 agagagagaga 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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