BAC Information

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BAC

Clone NameMSMg01-426M08
Chromosome5 (Build37)
Map Location 119,186,605 - 119,186,971
singlet/doubletsinglet
Overlap geneThrap2
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M08.T7 (MSMg01no426_m08.b1)MSMg01-426M08.TJ (MSMg01no426_m08.g1)
ACCAG520130AG520131
length805809
length of high quality
(start - end)
343 (65 - 407)383 (70 - 452)
definitionCHROMAT_FILE: MSMg01no426_m08.b1 PHD_FILE: MSMg01no426_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:26 2005CHROMAT_FILE: MSMg01no426_m08.g1 PHD_FILE: MSMg01no426_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGCATCCGCGGAATTCTAT
CCTTATTCCAAACCAGCATTTGATTGAGCCATTCTTTATGAAACTGACAT
TAGCGGGCTGGACAGATGGCGCAGCTGTGAACAGTGAATGCTGCTCTCAC
TGAGGGCTGGGGTTCCATTCCCAGCACCCATCAGGCAGCTACTGACCTCT
CACCCCAGCTCAGCGTCCAGGGCCTCTGACTTGCTCAGTCACTGAGGAGG
GCACCTGCACTCACTTGCTCATACCCACACCAACATACACACATAGTTAG
AGATCAGACCAACCAATTTTATAGAAACTCAAGGACTCAAACAGCAAGTT
TTAAAGTCAAACACTGTAATTGAGTAAAACAGGGAGTGTCTTAGTTAGGA
TTTCTACTACTGTGGAGAGCCACTATGATAACTCTTAGGAAGGAAGACAT
GTAATTGGGGCTGGCTTATAGGTCATGCTGTTAAGCATCCAGTGCGACTT
GGTTGTTAGAGAATGATTTTACTTTTTCCTTCGTATGTTTTTTGGCTTCG
CATTTTACTGTTAAAAATATGTTCATGCAACCTGGTCTGCCCTAACCATC
TTTATACTTCCTTAGTCTTCCCCTCTCGACTTTTTTTTTCTCCCTTATAT
CCATATTTCCTTCCTAAACCCTTCCTTCTTCTTTTATTCCTTTCGTCTAT
CTAATTCCCCTTTTATTTTTATTATTTATCATCCATATTTTCCACTTTCT
ACTTTTCTCTGATCCCCATATCAATATTCCCTTTACCCCAATCTATCTTA
TTCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGAGAGTCAGAACAGTGTGCTTCAAACTATG
GCAAACCAAATCAAGGCTTTAGAGAAGGAGTCTCTATCTGGGGAGATGAG
GGCAGAGTGGACAGGAAGGGCTGGAAAGAAAAATTCAACAGGGAACAGTG
AAACGACGTGTGTGTTTCCAGAATGGACTAACTTAATGGTGGCAAAGCCT
TTAATCCCAGCAACTCTGCAGTCTCAGGAGGCAGAAGTTGGCAGATCTCT
GAGTTCAAGGCCATTCTAATCTACACAGCAAGTTCCAGGGCAGTCAGGGC
TACACAGTGAGACCTTTCCAAACAACAAAAAAATTACAAAAGCTGGAGAG
ATGCCTCAGCAGTTAAGAGCACTGGCTGCTCTTGTGGAGGACCCAGGTTC
AGTTTCCAGCACCCACATGTATGGCAGCTCACAACTGTCTGTACTCCCAT
TTCAAGGGATCCATGGCTTCTAAGGTTACTTGTACTGTGAGTAAGTATAC
ATACTCTCCCTTCCCCACCTTTCATTCTTCTCCCTCTTTTTTCCTATAAA
TTTCCTGTGTTTTATATTCATTTTAAATTAAATCCCCTTTATCTTCTTAG
ATTTTTTCTTTACTCTCTTTTTCTTTTTTTCTCTCTTGTATAATCATTTC
TTTTCTTTTTTCCCTCTCTAGTTTTATTCGTCTTTTTTCCGTTTCTTTTT
ATCTTTCACTTTCCCTTCTTCCCTTTTTTCTTTTCCCTTTCTTTTCCTTC
TTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m08.g1 MSMg01no426_m08.g1 CHROMAT_FILE:
MSMg01no426_m08.g1 PHD_FILE: MSMg01no426_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:26 2005
         (383 letters)



>mm_chr5_119186605_119187387
          Length = 783

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagtcagaacagtgtgcttcaaactatggcaaaccaaatcaaggctttagagaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgagagtcagaacagtgtgcttcaaactatggcaaaccaaatcaaggctttagagaagga 308

                                                                       
Query: 61  gtctctatctggggagatgagggcagagtggacaggaagggctggaaagaaaaattcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtctctatctggggagatgagggcagagtggacaggaagggctggaaagaaaaattcaac 248

                                                                       
Query: 121 agggaacagtgaaacgacgtgtgtgtttccagaatggactaacttaatggtggcaaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agggaacagtgaaacgacgtgtgtgtttccagaatggactaacttaatggtggcaaagcc 188

                                                                       
Query: 181 tttaatcccagcaactctgcagtctcaggaggcagaagttggcagatctctgagttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tttaatcccagcaactctgcagtctcaggaggcagaagttggcagatctctgagttcaag 128

                                                                       
Query: 241 gccattctaatctacacagcaagttccagggcagtcagggctacacagtgagacctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gccattctaatctacacagcaagttccagggcagtcagggctacacagtgagacctttcc 68

                                                                       
Query: 301 aaacaacaaaaaaattacaaaagctggagagatgcctcagcagttaagagcactggctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aaacaacaaaaaaattacaaaagctggagagatgcctcagcagttaagagcactggctgc 8

                  
Query: 361 tcttgtg 367
           |||||||
Sbjct: 7   tcttgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)