Query= MSMg01no428_a20.b1 MSMg01no428_a20.b1 CHROMAT_FILE:
MSMg01no428_a20.b1 PHD_FILE: MSMg01no428_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:06 2005
(408 letters)
>mm_chr5_28438645_28439452
Length = 808
Score = 677 bits (350), Expect = 0.0
Identities = 389/408 (95%), Gaps = 10/408 (2%)
Strand = Plus / Minus
Query: 1 gaattccatctttaacacgtgttcccaccagcaacttgtgttcccaagacctcttgcctt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaattccatcttgaacacgtgttcccaccagcaacttgtgttcccaagacctcttgcctt 353
Query: 61 gtcatggagatacaccaacatagctggggtgatgctatcatggcccaggctgaagcccct 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 gtcatggagatacaccaacatagctggggtgaggctatcatggcccaggctgaagcccct 293
Query: 121 gaagtcataaaaaggaaagctagaaccatgtgtaagtagtgacctctacagaggggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaagtcataaaaaggaaagctagaaccatgtgtaagtagtgacctctacagaggggtgaa 233
Query: 181 acaaggttgaacaagtagatgctgcttgggcagggatggagctcagttgcagagtcaggc 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acaaggttggacaagtagatgctgcttgggcagggatggagctcagttgcagagtcaggc 173
Query: 241 ctagtatgcacagggccctgggttggatctctttaaccaattaaaaagaaaagaaaagaa 300
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172 ctagtatgcacagggccctgggttggatctctagaaccaattaaaaagaaa--------- 122
Query: 301 agacagcatagatgctgtctgactgcacatggcgaagactgagctccctgggaaagctaa 360
|| |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 121 -gatagcacagatgctgtctgactgcacatcgtgaagactgagctccctgggaaagctaa 63
Query: 361 gttttctctgccattcctttcaaggctttgctaaggctaagccattag 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gttttctctgccattcctttcaaggctttgctaaggctaagccattag 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_a20.g1 MSMg01no428_a20.g1 CHROMAT_FILE:
MSMg01no428_a20.g1 PHD_FILE: MSMg01no428_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:07 2005
(518 letters)
>mm_chr5_31669532_31670449
Length = 918
Score = 884 bits (457), Expect = 0.0
Identities = 502/517 (97%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 1 aaagaagccaagacagaagagaactcttaaaggcaaagagtgagaagttgggactggaga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaagaagctaagacagaagagaactcttaaaggcaaagagtgagaagttgggactggaga 259
Query: 61 aatggctcagaggttaagagcactggctgctcttctaaaggacctgggttcaattcccag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatggcacagaggttaagagcactggctgctcttctaaaggacctgggttcaattcccag 319
Query: 121 catccacgtgccagctcatagctgtctgtaactccagtta-aagaaattcaactccttca 179
||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 catccacatgacagctcatagctgtctgtaactccagttccaagaaattcaactccttca 379
Query: 180 cacaggcatacatgcaaacaatatacccatgcacataaaatgaaaataaatgaaaacttt 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacaggcatacgtgcaaacaatatacccatgcacataaaatgaaaataaatgaaaacttt 439
Query: 240 aaaaagagtatatattttaaaagaatgagaattttatgtggactgtttggattcaaaatc 299
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 aaaaagagtatatattttaaaagaatgagaattttatgtgggctgtttggattcaaaatt 499
Query: 300 catggacctaaagcatgagattatattggttgaagggctgtcactaggtacacattctgt 359
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 catggacctaaagcatgagactatattggttgaagggctgtcactaggcacacattctgt 559
Query: 360 tgggagcatcttgactataaggttgcagttttagagaacacaaagataaacctgtagaat 419
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 560 tgggagcatcttgactataagttttcagttttagagaacacaaagataaacctgtagaat 619
Query: 420 ctgtgtacatactgaggcatacaacacacatgtgattcaggaagaacagtggttctcaac 479
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 620 ctgtgtacatactgaggcatacaacacacctgtgattcatgaagaacagtggttctcaac 679
Query: 480 cttcctaatgctacaaccctctaatcaagttcctccc 516
|||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttcctaatgctacaaccctctaatcaagttcctccc 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
