BAC Information

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BAC

Clone NameMSMg01-428F06
Chromosome5 (Build37)
Map Location 102,892,231 - 103,052,386
singlet/doubletdoublet
Overlap geneArhgap24
Upstream geneLOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780
Downstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F06.T7 (MSMg01no428_f06.b1)MSMg01-428F06.TJ (MSMg01no428_f06.g1)
ACCAG521319AG521320
length745759
length of high quality
(start - end)
685 (48 - 732)508 (80 - 587)
definitionCHROMAT_FILE: MSMg01no428_f06.b1 PHD_FILE: MSMg01no428_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005CHROMAT_FILE: MSMg01no428_f06.g1 PHD_FILE: MSMg01no428_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,051,705 - 103,052,386)(102,892,231 - 102,892,738)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCCATACCGGTATAGACGTGGTTTCCCACAGCCCATCTTAC
CAGAGAACTTGGAACCTGGGTTATTGCATACACAATAATCTACCAAGGAC
ATTCTAGCTATCCTGACCTGATAACACCACTTTTCCCAAGTGTAGAGTGT
GTAGTGCACCTTGTACTCTCCTAGAGAAAACATTCAGAGAGCTACTCTAG
CAAGAGCAGGTAGCATGCCTCTTGACTCTTGCCTGACTTGCATTAGGGAA
ATGCTGGTTACCTTCACTGTTGTATCAGCTAAGTATCTCAGGGATGTGCA
TGTGGCTTCTTACACAGCTACCAGCCTTTCTGGTACATTCAGCATTCGGT
TTTTACTCACACCGAAGAAGAAAGCTTCCCCTTTTTCACTGACCAAGGCC
CCCTCTTTCCTTCTTGTTATTGACTATATTGCTTGCTTTTCCCCAAAAAT
ACTGCTCAGGAATAAATTCCATGAAGATTGCTCAGGCTAACTCTGATTAC
AGACTGTTGCAAGTACCCCCTTGACGTCCATGAATGGACGGACAAGTAGA
CATTTCTTTGTAGCTATTTGTATTCTCTTGTCCATGAGGAACTCTCATAC
AAGAAGTAACACAAATTCTCTCTTGGGAAGATCTTACAACTAAGTTCAAG
TTGATTGACTCAAGGTGATTGTGAATGATCAGTTAGTGCCAGTCN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAACTGTGAACCTTCTACT
GTTGCAAATAGTTTGCTTCCCAACGATGGAAGATGCTCTTCTTTCCCTGT
GAGAAAACAAACTCCCAGCCTGGTGTCCTTTCCTGTTGTCTTCCAAAGCA
AAGCTTTGGCCAACCCTATTTGCACGTTGGAGCTTCCAAGTTTTGGTCAC
AGTGCCCTCTCTGCAATGTATTAATGTCTGAGGTCTCAGATACTTCATAG
AGGGTCATAAGAATTGCATACACTTGTCCTCTATTTACAGGCTCTAATAT
ACATATGCACAACAGTAGCCAGCCAACACTTTCCTATTAGAGAGCTGATT
ACCCAACCTGACTTAATGCACTCCTAACTACCAGTGCATGTGGGGACTCA
CAGGATGAGTGTTTCAGTGTGGCTGGCTTGAGGAAGCTTATGGTAGGTTT
GCTGAGATAGAAGTTGAATTGATAAGAACGGACTGGTCTTGGAAAAAGCA
CACACTGCTCCACACCGACAGCTGAGAAGGAAAAGCTCCCAGGAGAAGAG
GCTTCAGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTTTTNNG
NNGNNNNNNNNTNTNTNNNTTNTNNNTNTTTNTNNTTTNTTTTTTTTTTT
TTTTTTTTTTTTTNNTTTNNTNNTTTTNTNTTTTTNNNTTTTNNTTTTNN
TNNTTTNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f06.b1 MSMg01no428_f06.b1 CHROMAT_FILE:
MSMg01no428_f06.b1 PHD_FILE: MSMg01no428_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (685 letters)



>mm_chr5_103051502_103052586
          Length = 1085

 Score = 1234 bits (638), Expect = 0.0
 Identities = 671/682 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcccataccggtatagacgtggtttcccacagcccatcttaccagagaactt 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 ggaattcttcccataagggtatagacgtggtttcccacagcccatcttaccagagaactt 826

                                                                       
Query: 64  ggaacctgggttattgcatacacaataatctaccaaggacattctagctatcctgacctg 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 825 ggaacctgggttattgcatacacaataatctaccagggacattctagctatcctgacctg 766

                                                                       
Query: 124 ataacaccacttttcccaagtgtagagtgtgtagtgcaccttgtactctcctagagaaaa 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ataacaccacttctcccaagtgtagagtgtgtagtgcaccttgtactctcctagagaaaa 706

                                                                       
Query: 184 cattcagagagctactctagcaagagcaggtagcatgcctcttgactcttgcctgacttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cattcagagagctactctagcaagagcaggtagcatgcctcttgactcttgcctgacttg 646

                                                                       
Query: 244 cattagggaaatgctggttaccttcactgttgtatcagctaagtatctcagggatgtgca 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 645 cattagggaaatgctggttaccttcactgttgcatcagctaagtatctcagggatgtgcg 586

                                                                       
Query: 304 tgtggcttcttacacagctaccagcctttctggtacattcagcattcggtttttactcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgtggcttcttacacagctaccagcctttctggtacattcagcattcggtttttactcac 526

                                                                       
Query: 364 accgaagaagaaagcttcccctttttcactgaccaaggccccctctttccttcttgttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 accgaagaagaaagcttcccctttttcactgaccaaggccccctctttccttcttgttat 466

                                                                       
Query: 424 tgactatattgcttgcttttccccaaaaatactgctcaggaataaattccatgaagattg 483
           |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||
Sbjct: 465 tgactatattgcttgcttttccccaaaaattctgcttgggaataaattccatgaagattg 406

                                                                       
Query: 484 ctcaggctaactctgattacagactgttgcaagtacccccttgacgtccatgaatggacg 543
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcaggctaactctgattacaaactgttgcaagtacccccttgacgtccatgaatggacg 346

                                                                       
Query: 544 gacaagtagacatttctttgtagctatttgtattctcttgtccatgaggaactctcatac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gacaagtagacatttctttgtagctatttgtattctcttgtccatgaggaactctcatac 286

                                                                       
Query: 604 aagaagtaacacaaattctctcttgggaagatcttacaactaagttcaagttgattgact 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 285 aagaagtaacacaaattctctcttgggaagatcttacaactaagttcaagtcgattgact 226

                                 
Query: 664 caaggtgattgtgaatgatcag 685
           ||||||||||||||||||||||
Sbjct: 225 caaggtgattgtgaatgatcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no428_f06.g1 MSMg01no428_f06.g1 CHROMAT_FILE:
MSMg01no428_f06.g1 PHD_FILE: MSMg01no428_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (508 letters)



>mm_chr5_102892031_102892938
          Length = 908

 Score =  897 bits (464), Expect = 0.0
 Identities = 497/508 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaactgtgaaccttctactgttgcaaatagtttgcttcccaacgatggaagatgctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaactgtgaaccttctactgttgcaaatagtttgcttcccaacgatggaagatgctct 260

                                                                       
Query: 61  tctttccctgtgagaaaacaaactcccagcctggtgtcctttcctgttgtcttccaaagc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttccctgtgagaaaacaaattcccagcctggtgtcctttcctgttgtcttccaaagc 320

                                                                       
Query: 121 aaagctttggccaaccctatttgcacgttggagcttccaagttttggtcacagtgccctc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagctttggccaaccctatttgcatgttggagcttccaagttttggtcacagtgccctc 380

                                                                       
Query: 181 tctgcaatgtattaatgtctgaggtctcagatacttcatagagggtcataagaattgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcaatgtattaatgtctgaggtctcagatacttcatagagggtcataagaattgcat 440

                                                                       
Query: 241 acacttgtcctctatttacaggctctaatatacatatgcacaacagtagccagccaacac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgcttgtcctctatttacaggctctaatatacatatgcacaacagtagccagccaacac 500

                                                                       
Query: 301 tttcctattagagagctgattacccaacctgacttaatgcactcctaactaccagtgcat 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tttcctattagagagctgattacccaacctgacttaatgcactcctaaataccagtgcat 560

                                                                       
Query: 361 gtggggactcacaggatgagtgtttcagtgtggctggcttgaggaagcttatggtaggtt 420
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gtgggaactcacaggatgagtgtttcagtgtggttggcttgaggaagcttatggtaggtt 620

                                                                       
Query: 421 tgctgagatagaagttgaattgataagaacggactggtcttggaaaaagcacacactgct 480
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tgctgagacagaagttgaattgataagaacggactggtcttgggaaaagcacacactgct 680

                                       
Query: 481 ccacaccgacagctgagaaggaaaagct 508
             |||| |||||||||||||||||||||
Sbjct: 681 ttacactgacagctgagaaggaaaagct 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)