GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAACAG
AGCAGCTTCTGTCACACCATTGCTTTCTGAAAGTCAGTGTCTCTGTGGAA
AGTCAGCCATCCATGTCCATTCTTTCCTTTATGCTGGCTTCAAGGTTCCC
TGCTGCTCTGCACTGGTGCTTGGCCTCATGGACATCATTAATCTGTAACT
CAAATTTGGACTTATTGGTTCTGGAAAATTCTCAGCCACTACCTTTTCAG
ATATTGTATCTATTCTTTCTCCCATATGTGGAACTCCAGCTACACCCATG
TTACTTACACATCTCTTAACCTCTGTTACACTCTTCCTGTGCCTTTCTTC
TATAGGACTCATTTTGGGTGACTTATTTTAAACATTTTTAGTGGGTTTGA
GTCATTTTGTTCTGTCTTGTGTTGTGCCACGTGTAAGGTTAAACCTATTC
AATGATTTACGAGCTTCACATACTGTATTTCTAGTTTTAAGCTCGGAGAT
GGCCATTCTATTTTGTACAGGTAGGAATTTTCTATTTGAATCTACCAATT
TCAAACTTATTTTGTCTTGTACATATTTTCAGTATTTTCTGTAGCATATT
CATAAGGACTGTTTTAAAGACTGCATCTTTTACAAAACATATTCACAATC
TATAGTTGCCAGCCAATGTCTCGTGGGAAAAGCTTATTTAGATTGAAATC
TGTCATAGCTGTGCTTTTCATTAAAACAACCAACAGCAACACAAAGATT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
TGAGAAGCACCTGAAAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGATTGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAGG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTCGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATATAATTGGACATAGTACTACCGGAG
GATCCTACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAG
TAAGAAAGACACATGCTCCACTATGTTCATAGTAGCCTTATTAATAATAG
CCCGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAACAACTGATGCAC
AGCATGTGGTACATTTACACCATGGAGTACTAGCCCGCTATTAAAAAGAA
TGAATTTATGAAATTCCTACGCAAATGGTTGGAGCTGGAGGGCATTATCC
TGAGTGATGTAACCCAATCCCCACACAACTCCAACGATTATTTCCCACCG
CATAGCGGCTATGATCCCCCAAACCTATCAAACCCCCGACATTACACACC
CCTTCCGAAACCACTC

Query= MSMg01no429_b05.b1 MSMg01no429_b05.b1 CHROMAT_FILE:
MSMg01no429_b05.b1 PHD_FILE: MSMg01no429_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:26 2005
         (623 letters)



>mm_chr5_4278039_4279055
          Length = 1017

 Score = 1154 bits (597), Expect = 0.0
 Identities = 611/619 (98%), Gaps = 6/619 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaacagagcagcttctgtcacaccattgctttctgaaagtcagtgtctctgtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 817 gaattctaacagagcagcttctgtcacaccattgctttctgaaa------gtctctgtgg 764

                                                                       
Query: 65  aaagtcagccatccatgtccattctttcctttatgctggcttcaaggttccctgctgctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaagtcagccatccatgtccattctttcctttatgctggcttcaaggttccctgctgctc 704

                                                                       
Query: 125 tgcactggtgcttggcctcatggacatcattaatctgtaactcaaatttggacttattgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgcactggtgcttggcctcatggacatcattaatctgtaactcaaatttggacttattgg 644

                                                                       
Query: 185 ttctggaaaattctcagccactaccttttcagatattgtatctattctttctcccatatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttctggaaaattctcagccactaccttttcagatattgtatctattctttctcccatatg 584

                                                                       
Query: 245 tggaactccagctacacccatgttacttacacatctcttaacctctgttacactcttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tggaactccagctacacccatgttacttacacatctcttaacctctgttacactcttcct 524

                                                                       
Query: 305 gtgcctttcttctataggactcattttgggtgacttattttaaacatttttagtgggttt 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 523 gtgcctttcttctataggactcattttgagtgacttattttaaacatttttagtgggttt 464

                                                                       
Query: 365 gagtcattttgttctgtcttgtgttgtgccacgtgtaaggttaaacctattcaatgattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gagtcattttgttctgtcttgtgttgtgccacgtgtaaggttaaacctattcaatgattt 404

                                                                       
Query: 425 acgagcttcacatactgtatttctagttttaagctcggagatggccattctattttgtac 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 acgagcttcacatactgtatttctagttttaagctccgagatggccattctattttgtac 344

                                                                       
Query: 485 aggtaggaattttctatttgaatctaccaatttcaaacttattttgtcttgtacatattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aggtaggaattttctatttgaatctaccaatttcaaacttattttgtcttgtacatattt 284

                                                                       
Query: 545 tcagtattttctgtagcatattcataaggactgttttaaagactgcatcttttacaaaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcagtattttctgtagcatattcataaggactgttttaaagactgcatcttttacaaaac 224

                              
Query: 605 atattcacaatctatagtt 623
           |||||||||||||||||||
Sbjct: 223 atattcacaatctatagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1017
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1007
Effective search space:   617291
Effective search space used:   617291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)