Query= MSMg01no429_f09.b1 MSMg01no429_f09.b1 CHROMAT_FILE:
MSMg01no429_f09.b1 PHD_FILE: MSMg01no429_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:47 2005
(545 letters)
>mm_chr5_48303586_48304531
Length = 946
Score = 926 bits (479), Expect = 0.0
Identities = 527/543 (97%), Gaps = 2/543 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgaa-accacttgccaattaaccctcgtcacgttgtcaagctccaggttcagt 63
||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 893 gaattcttgaacaccactcgccaattaaccctcgtcacgtagtcaagctccaggttcagt 834
Query: 64 ggaaatcctgtctcaaaaatgtgaagaataatggataaagatacctaacaatgatgtctg 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 833 ggatatcctgtctcaaaaatgtgaagaataatggataaagatacctaacaatgatatctg 774
Query: 124 gcttctacaccaaagttcaaacacacattaacaccaatacccatacatagataagaacat 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 773 gcttctacaccaaagttcaaacacacattaacaccaatacccatacgtagataagaacat 714
Query: 184 atacattcataccacatgcacgaacacatacatattcaaaaaggtaaagccatatgtgat 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atacattcataccacatgcaagaacacatacatattcaaaaaggtaaagccatatgtgat 654
Query: 244 acagttgataaagactaacaaagtcaaaagcac-tttgacttgttgaatattaccagcag 302
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 653 acagttgataaagactaaccaagtcaaaaacacttttgacttgttgaatattaccagcag 594
Query: 303 ttaactacagacataatttgtcttatagatgttatgggacttcattatcatcatcagcat 362
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 593 ttaactacagacataatttgtcttgtagacgttatgggacttcattatcatcatcagcat 534
Query: 363 ttaattaatgaagataaacaatgagaacatagcaactttaaattctgttatgggaagtct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttaattaatgaagataaacaatgagaacatagcaactttaaattctgttatgggaagtct 474
Query: 423 aaaactcaggggtaatgctcactagttcagttcccctgcccccacgttgtattaaacctg 482
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 473 aaaactcaggggtaatgttcaccagttcagttcccctgcccccaagttgtattaaacctg 414
Query: 483 gcttttaaatgaagttaacatattttctgccttataatatttgtatataaccaatattta 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 413 gcttttaaatgaagttaacatattttctgccttataatatttgtgtataaccaatattta 354
Query: 543 cca 545
|||
Sbjct: 353 cca 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_f09.g1 MSMg01no429_f09.g1 CHROMAT_FILE:
MSMg01no429_f09.g1 PHD_FILE: MSMg01no429_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:47 2005
(356 letters)
>mm_chr5_48140637_48141392
Length = 756
Score = 642 bits (332), Expect = 0.0
Identities = 350/356 (98%), Gaps = 2/356 (0%)
Strand = Plus / Plus
Query: 1 acaaagtccagacccatgtgtgccaatatctcaatttctacagcaagtcttatgggtaaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagtccagacccatgtgtgccaatgtctcaatttctacagcaagtcttatgggtaaa 260
Query: 61 attcagaccataaaggaagatgtagtttccaccatttggtagagaaaactaaaaggtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcagaccataaaggaagatgtagtttccaccatttggtagagaaaactaaaaggtatt 320
Query: 121 tatatatttatggttttatttttaatttaaagctaccatgtagcatgaagtctaacatta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatttatggttttatttttcatttaaagctaccatgtagcatgaagtctaacatta 380
Query: 181 aataaggaatatttgactttatcattgttttatttttaaaaaaactttatgagataagat 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aataaggaatatttgactttatcattgttttatttttaaaaaa-ctttatgagataagat 439
Query: 241 actgacttttataactacactgagtttttttcttccaaattatttcaaattaggatctaa 300
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 440 actgacttttataaccacactgagtttttt-cttccaaattatttcaaatcaggatctaa 498
Query: 301 acttaagttcacacaaatgtataagaaaaatgtaaagactctgttagaagcttaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acttaagttcacacaaatgtataagaaaaatgtaaagactctgttagaagcttaaa 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
