BAC Information

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BAC

Clone NameMSMg01-429H08
Chromosome5 (Build37)
Map Location 101,619,648 - 101,802,866
singlet/doubletdoublet
Overlap geneLOC100041888, LOC100040902, Cycs-ps2
Upstream geneLOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H08.T7 (MSMg01no429_h08.b1)MSMg01-429H08.TJ (MSMg01no429_h08.g1)
ACCAG522182AG522183
length744730
length of high quality
(start - end)		568 (38 - 605)423 (74 - 496)
definitionCHROMAT_FILE: MSMg01no429_h08.b1 PHD_FILE: MSMg01no429_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:57 2005CHROMAT_FILE: MSMg01no429_h08.g1 PHD_FILE: MSMg01no429_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,619,648 - 101,620,211)(101,802,444 - 101,802,866)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTTTAGCTCTGTACCCCATTTTTAAATGGGGCTATTTGAATTTCTGGAGT
CCAGCTTCTTGTCATCTATACGATGGAACACAGGGCCCCCAATGGAGAAG
CTAGAGAAAGTACCCAAGGAGCTAAAGGTGTCTGCAGCCCTATAGGTGGA
ACAACAATATGAACTAATCAGTATCCCCAGAGCTTGTGTCTCTAGCTGCA
TATGTATCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCT
TGGTCTTCCTAATTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGA
AGCAGGAGTGGGTAGGTAGGGGAGCAGGGCGGGGGAGGGTATAGGGAACT
TTCGGGATAGCATTTGAAATGTAAAAAATGAAAATATCTAATAAAAAGAA
AAAGAAAGAGCACATGCTCAGGATGCGTTCATTCAGTCTTTGGAGGAAAG
GGGATTCCTGCCAACAGGATAAGATGTCACAAAGACTCAGGAATGCCACT
GTGAGAAGGGTGTGTCTTCCTTGAAGATTTTCATGACACAGTCTTTTAAA
TGCTTGCTAATTCACACAATGATCTTCAGCTAAACTGTGAAGACTCCTGC
TTCCTGTGCCTTCCTCCCGGAAGCCACTCATTTTGTTGCCTCCAGAGTTT
GGTTCCCTAAAACACAAGCCAGCCCATCTCCCTTTGCGAAGAAG

TATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTCCAGCAACCACTTAATGGCTCA
CAACCATCTATAATTGGATCTGATGCTCTTTTCTGGTGTGTCTGGACACA
GCTACAGTGTACTCATATACATAAAATAAATAAGTAATTCTAAATGAGTG
AACTATTCAATATTGCATATGTAGGATTAGTAAGGAAAGTCTTTACTAAC
TTAGAATAATAATTCATATATATGTCATATATATATGACAAAAGACCCAT
CTATTTAAAATAAGTAGTTTCACAGATTGATATTAATATGTATTTTTAAA
CATGGATATGTTTAGACTTGATTATGAAGCAGTTATCTTACAACTAGAGT
TCACTAAAATTATTTGTGAAGTCATTTTATCTTAATTGTGACATATTCCA
CATGATCACAATTATAATGACGTCTGCAGTTAGATTAACAAAGCTACAGC
CCTTTTTCCCCAGAGAAAGTATCACATTATGAACAACTGAACGACGAAGA
CTAGCTTTCAAGTTCCTCACAGTGAGATTGAAGATCTATTAGCCTCCGAT
AGGCTTTCTCTAATCCAAGGGAAGGAACCCCACTTCTCTGTGCCCTGGGG
CCCTTATGAAAATTATTCTAATTCCCCCCCGACATATTTGTAGCCTATTC
CAAAGTTTGTCCACTTGCCCCACTCTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h08.b1 MSMg01no429_h08.b1 CHROMAT_FILE:
MSMg01no429_h08.b1 PHD_FILE: MSMg01no429_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:57 2005
         (568 letters)



>mm_chr5_101619444_101620411
          Length = 968

 Score = 1052 bits (544), Expect = 0.0
 Identities = 559/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttagctctgtaccccatttttaaatggggctatttgaatttctggagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtttagctctgtaccccatttttaaatggggctatttgaatttctggagtc 264

                                                                       
Query: 65  cagcttcttgtcatctatacgatggaacacagggcccccaatggagaagctagagaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcttcttgtcatctatacgatggaacacagggcccccaatggagaagctagagaaagt 324

                                                                       
Query: 125 acccaaggagctaaaggtgtctgcagccctataggtggaacaacaatatgaactaatcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acccaaggagctaaaggtgtctgcagccctataggtggaacaacaatatgaactaatcag 384

                                                                       
Query: 185 tatccccagagcttgtgtctctagctgcatatgtatcagaagatggcctagtcggccatc 244
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct: 385 tatccccagagcttgtgtctctagctgtatatgtagcagaagatggcctagtcagccatc 444

                                                                       
Query: 245 actgggaagagaggccccttggtcttcctaatttatatgccccagtacaggggaacacca 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 actgggaagagaggccccttggtcttccaaatttatatgccccagtacaggggaacacca 504

                                                                       
Query: 305 gggccaagaagcaggagtgggtaggtaggggagcagggcgggggagggtatagggaactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggccaagaagcaggagtgggtaggtaggggagcagggcgggggagggtatagggaactt 564

                                                                       
Query: 365 tcgggatagcatttgaaatgtaaaaaatgaaaatatctaataaaaagaaaaagaaagagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgggatagcatttgaaatgtaaaaaatgaaaatatctaataaaaagaaaaagaaagagc 624

                                                                       
Query: 425 acatgctcaggatgcgttcattcagtctttggaggaaaggggattcctgccaacaggata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 acatgctcaggatgcgttcattcagtctttggaggaaaggggattcctgccaacaggatg 684

                                                                       
Query: 485 agatgtcacaaagactcaggaatgccactgtgagaagggtgtgtcttccttgaagatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agatgtcacaaagactcaggaatgccactgtgagaagggtgtgtcttccttgaagatttt 744

                                   
Query: 545 catgacacagtcttttaaatgctt 568
           ||||||||||||||||||||||||
Sbjct: 745 catgacacagtcttttaaatgctt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_h08.g1 MSMg01no429_h08.g1 CHROMAT_FILE:
MSMg01no429_h08.g1 PHD_FILE: MSMg01no429_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:57 2005
         (423 letters)



>mm_chr5_101802126_101802948
          Length = 823

 Score =  803 bits (415), Expect = 0.0
 Identities = 421/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttccagcaaccacttaatggctcacaaccatctataattggatctgatgctcttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatttccagcaaccacttaatggctcacaaccatctataattggatctgatgctcttttc 682

                                                                       
Query: 61  tggtgtgtctggacacagctacagtgtactcatatacataaaataaataagtaattctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtgtgtctggacacagctacagtgtactcatatacataaaataaataagtaattctaa 622

                                                                       
Query: 121 atgagtgaactattcaatattgcatatgtaggattagtaaggaaagtctttactaactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgagtgaactattcaatattgcatatgtaggattagtaaggaaagtctttactaactta 562

                                                                       
Query: 181 gaataataattcatatatatgtcatatatatatgacaaaagacccatctatttaaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaataataattcatatatatgtcatatatatatgacaaaagacccatctatttaaaataa 502

                                                                       
Query: 241 gtagtttcacagattgatattaatatgtatttttaaacatggatatgtttagacttgatt 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gtagtttcacagattgatattaatatgtatttttaaacatggatatatttagacttgatt 442

                                                                       
Query: 301 atgaagcagttatcttacaactagagttcactaaaattatttgtgaagtcattttatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaagcagttatcttacaactagagttcactaaaattatttgtgaagtcattttatctt 382

                                                                       
Query: 361 aattgtgacatattccacatgatcacaattataatgacgtctgcagttagattaacaaag 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aattgtgacatattccacatgatcacaattataatgatgtctgcagttagattaacaaag 322

              
Query: 421 cta 423
           |||
Sbjct: 321 cta 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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