Query= MSMg01no429_j05.b1 MSMg01no429_j05.b1 CHROMAT_FILE:
MSMg01no429_j05.b1 PHD_FILE: MSMg01no429_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:06 2005
(384 letters)
>mm_chr5_41631802_41632585
Length = 784
Score = 659 bits (341), Expect = 0.0
Identities = 359/365 (98%), Gaps = 1/365 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttgtgcttgggttacctcattgcttcttaaaatctattttcagcaatggtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcttttgtgcttgggttacctcattgcttcttaaaatctattttcagcaatggtat 462
Query: 65 cctagaacttagtcattttgtcaaagcatactcaggaatctgtcattgtagcatagtgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctagaacttagtcattttgtcaaagcatactcaggaatctgtcattgtagcatagtgtg 402
Query: 125 tgcacagtgtcctttgaaggacccacatcaggatgtaccgaatcacagtgaagcatggca 184
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 401 tgcacagtttcctttgaaggacccacattaggatgtaccgaatcacagtgaagcatggca 342
Query: 185 ctcttatatggtggctgtagattcctgcattgagattcttactgatactttggaaaattg 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 341 ctcttatatggtggctgtagattcctacattgagattcttactgatactttggaaaactg 282
Query: 245 aatgcaatcttaattttattcaacagtcaccaaatccaaattttatatgtaccacatatt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 281 aatgcaatcttaattttattcaacagtcaccaaatccaaattttatatgtaccacatagt 222
Query: 305 tcacatatttacagctaatatatatatatatatatatatatatatatatatatatatata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 221 tcacatatttacagctaatatatatatatatatatatatatatatatatatatatat-ta 163
Query: 365 tatat 369
|||||
Sbjct: 162 tatat 158
Score = 87.7 bits (45), Expect = 1e-21
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 321 aatatatatatatatatatatatatatatatatatatatatatatatat 369
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aatatata-atatatatatatatatatatatatatatatatatatatat 204
Score = 87.7 bits (45), Expect = 1e-21
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 330 atatatatatatatatatatatatatatatatatatatatatatatatt 378
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atatata-atatatatatatatatatatatatatatatatatatatatt 205
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 320 taatatatatatatatatatatatatatatatatatatatat 361
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Sbjct: 163 taatatatatatatatatatatatatatatatatatatatat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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