Query= MSMg01no429_j08.b1 MSMg01no429_j08.b1 CHROMAT_FILE:
MSMg01no429_j08.b1 PHD_FILE: MSMg01no429_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:07 2005
(524 letters)
>mm_chr5_46186346_46187269
Length = 924
Score = 955 bits (494), Expect = 0.0
Identities = 494/494 (100%)
Strand = Plus / Minus
Query: 31 ggttatacaattttgtagttgtaccaacaatgagtcattattcccctactcccacattct 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ggttatacaattttgtagttgtaccaacaatgagtcattattcccctactcccacattct 865
Query: 91 caccagcattctttttttttcatttatttttttaattaggtattttcttcatttatattt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 caccagcattctttttttttcatttatttttttaattaggtattttcttcatttatattt 805
Query: 151 caaatgctatcccaaaagtcccccagaccctccacccccaactcccccacccacccactc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaatgctatcccaaaagtcccccagaccctccacccccaactcccccacccacccactc 745
Query: 211 ccacttcttggccctggcgttcccccgtactgaggcagataaagtttgcacgaccaagct 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacttcttggccctggcgttcccccgtactgaggcagataaagtttgcacgaccaagct 685
Query: 271 ccccagcattcttgacttacatattaggtcgtgcttgacagtactttagcttgggttaat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccccagcattcttgacttacatattaggtcgtgcttgacagtactttagcttgggttaat 625
Query: 331 atatgcatttcagtattctagttactttacaatcttaatgtgacagtcactatataatta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatgcatttcagtattctagttactttacaatcttaatgtgacagtcactatataatta 565
Query: 391 gttcactttaaactggatgaaaataacaggtatactatggtaaattgtttgttgattaat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttcactttaaactggatgaaaataacaggtatactatggtaaattgtttgttgattaat 505
Query: 451 ataaaattcaggagttttgtttgtttgtttgtttgtttttggtttttcgagacagggttt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataaaattcaggagttttgtttgtttgtttgtttgtttttggtttttcgagacagggttt 445
Query: 511 ctctgtatagccct 524
||||||||||||||
Sbjct: 444 ctctgtatagccct 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_j08.g1 MSMg01no429_j08.g1 CHROMAT_FILE:
MSMg01no429_j08.g1 PHD_FILE: MSMg01no429_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:07 2005
(450 letters)
>mm_chr5_46012914_46013763
Length = 850
Score = 810 bits (419), Expect = 0.0
Identities = 443/451 (98%), Gaps = 2/451 (0%)
Strand = Plus / Plus
Query: 1 agtaatccatgtcccctggcggctacacttcccatggaacctataatcaaggagcactgg 60
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agtaatccatgtcccctggctgctacacttcccatggaacctacaatcaaggagcactgg 260
Query: 61 gacaaaggtcaatgcagcctaatacaagtgaaaagaaaggattgttgtaaagggtagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaaggtcaatgcagcctaatacaagtgaaaagaaaggattgttgtaaagggtagaga 320
Query: 121 ggacgtgaactcgcctcttttcatcatttcagaactcaacccaagaataaagaccatgaa 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagtgaactcgcctcttttcatcatttcagaactcaacccaagaataaagaccatgaa 380
Query: 181 tttagaatccatttaatgttttctctgaagtactgtgggtctaacttcagcttaaggatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tttagaatccatttaatgttttctctgaagtactgtgggtctaacttcaggttaaggatc 440
Query: 241 aaatgcccagagactcaaagaaaatatgacctgaaacttcattaaatgttgctgggagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgcccagagactcaaagaaaatatgacctgaaacttcattaaatgttgctgggagac 500
Query: 301 cccagtgccactcatcaggggtgactttctgttcctaccaag-ccctcctagtgcttgtt 359
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 tccagtgccactcatcaggggtgactttctgttcctacca-gaccctcctagtgcttgtt 559
Query: 360 tcagcagatgaccaactcatttccccagatactccacagctacaaacactgtcccttggg 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcagcaggtgaccaactcatttccccagatactccacagctacaaacactgtcccttggg 619
Query: 420 ggttactttctggattccactttaccaggga 450
|||||||||||||||||||||||||||||||
Sbjct: 620 ggttactttctggattccactttaccaggga 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
