BAC Information

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BAC

Clone NameMSMg01-429L16
Chromosome5 (Build37)
Map Location 31,558,913 - 31,559,235
singlet/doubletsinglet
Overlap geneIft172
Upstream geneD5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3
Downstream geneFndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L16.T7 (MSMg01no429_l16.b1)MSMg01-429L16.TJ (MSMg01no429_l16.g1)
ACCAG522389AG522390
length736754
length of high quality
(start - end)
533 (36 - 568)323 (74 - 396)
definitionCHROMAT_FILE: MSMg01no429_l16.b1 PHD_FILE: MSMg01no429_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005CHROMAT_FILE: MSMg01no429_l16.g1 PHD_FILE: MSMg01no429_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCTTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTAT
TGACAGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT
TTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAGTCCACTTAGATTT
GACCTTAGTACAAGGAGATAGGTGTGGGGAGCGGGTGTGGCGGCAGTCCC
AAAGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCCT
CATATAAGACACAAACATCTTGAGTGCTGCTCAGGTGTACCAGGATACAG
GTGAATCCAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAG
CCTCGTGACTGGCGAGGGGGCGTGGCCTGCTGTGTGCGGATGATAGATAG
CATAACACGACCGAGAGACCCATGTATCCGGGTGCCTACTCTATTGAACA
ATTTTTGATTGACTCACTGCTGCTTATCTTACTTGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAAGAAGGCTGTACCTGTGGGTTTGC
AGGGGCTCCGTGTTGCACATAGAGGGCCAGTGCCTGGGCATAGCCACCTT
CTCGGATCAGATGAGTTGCATACAAAGCCACATACTTGTGCAGAATCTTG
TAGTTCTGTTTGGGAGTTTGGGAGGGAGGACATGGACAAGGCTCAGATCA
ATAAGAACTGGCAGCAAGAGACCAGGGATTTGTTCAGGGAGTAAAGGGCA
CGTACAGTTCTGACCACAGTATCTTAGTTACCAAAGACTGATGTTCAGTA
GGGGCCTTTGCAGATTGGCCACTGGTGGAGTTAAGAGGTGGGAAGCTCAC
AAGCAGGGAGGGAGCGCAGTACCTGCTTGGCAGCTGCTTCAATGTATTTA
TCCCACTGGCCCTGCTCCCCATACAGGTCCTAGGCAGCTACTATGTCCAC
ACCCCCCCGCTGTAGATCAAAACCAATGGTGAGCCTACCCGACCCATTAT
CTTCCCCTCTCCCCTTTCCCCATTCGTTTCTTACCTCTCTTGCCCCCTCC
CCGGATGTCGTCCGTTCCCAACCCCCCGTTCTCTCTATACTCTGTTTCCT
CCCGGCCCCGCCTCTCTTTTTTTTTTTCCCCTTCTTCTTTCTCCCCCCCT
CCTTTTCTTTCTTTCTTTTTCCCTCCTTTTTTCCTTTTTCCCCCCCCTCT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l16.g1 MSMg01no429_l16.g1 CHROMAT_FILE:
MSMg01no429_l16.g1 PHD_FILE: MSMg01no429_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:18 2005
         (323 letters)



>mm_chr5_31558713_31559435
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagaaggctgtacctgtgggtttgcaggggctccgtgttgcacatagagggccagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagaaggctgtacctgtgggtttgcaggggctccgtgttgcacatagagggccagtgc 260

                                                                       
Query: 61  ctgggcatagccaccttctcggatcagatgagttgcatacaaagccacatacttgtgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggcatagccaccttctcggatcagatgagttgcatacaaagccacatacttgtgcag 320

                                                                       
Query: 121 aatcttgtagttctgtttgggagtttgggagggaggacatggacaaggctcagatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcttgtagttctgtttgggagtttgggagggaggacatggacaaggctcagatcaata 380

                                                                       
Query: 181 agaactggcagcaagagaccagggatttgttcagggagtaaagggcacgtacagttctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaactggcagcaagagaccagggatttgttcagggagtaaagggcacgtacagttctga 440

                                                                       
Query: 241 ccacagtatcttagttaccaaagactgatgttcagtaggggcctttgcagattggccact 300
           ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatagtatcagagttaccaaagactgatgttcagtaggggcctttgcagattggccact 500

                                  
Query: 301 ggtggagttaagaggtgggaagc 323
           |||||||||||||||||||||||
Sbjct: 501 ggtggagttaagaggtgggaagc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)