BAC Information

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BAC

Clone NameMSMg01-429M02
Chromosome5 (Build37)
Map Location 151,676,849 - 151,677,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Downstream geneLOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M02.T7 (MSMg01no429_m02.b1)MSMg01-429M02.TJ (MSMg01no429_m02.g1)
ACCAG522409AG522410
length753707
length of high quality
(start - end)
448 (60 - 507)492 (73 - 564)
definitionCHROMAT_FILE: MSMg01no429_m02.b1 PHD_FILE: MSMg01no429_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:20 2005CHROMAT_FILE: MSMg01no429_m02.g1 PHD_FILE: MSMg01no429_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCACANATACACAACACCGCGGAATTCTCCGGGTAA
CCAAGAATGCAGGGAAAAGTGAAGCCCTGCCAGCTTACTTTCCCCATCTG
TTCCCCTTCTGCCCCTCACTCCCAGCATCCTCCAAGGTTCCTGTCCTCCA
CTTTCCTGTTGCTGCCTTGATCTCCATATCTCTGTCCCTCATGTCTGAGC
TCACTGTGGGGTGTGCAGAAATCTCGGTATAAAGCTAAGCACTGTGACAT
GTCCAGAACTCCCCTCCACGTTGCCAGTCCCAGGCACATGGCTCTGTCCC
CATGATTTGTTAGGAGACATAGGGATGAGCTGTGACCTGAAACCTCACAG
TCTGGAAGCTTGGTCTGGCTGTAGTTGTACAGGGGATGCAAATGGCCAGA
GGGACTTTTCAGAATCCAGTCCAGCCCCTGCCTGCCTACATGGCCTGGGC
ATCTGCCTTTTCCTCCTGAGACCAGGAAGTCTCACCTGGCAGGGCGGTGG
TGGTGCACGCCTTTAATCCCAGCACTTGGCCAGTTTCACCTCCCCTCACT
TCTGATTTCCGGCTTTCAAGTCCTTCTCGTTTACAAACCCCCTTTTTTTT
TTCTCCTGTCCCCTATTCTTATCTCTTGCCCCCTCCATCTTTTTCTTTAT
ACCCTAATTTTCGCCCACACGCCCCCCCCTACATTTTCCTCATTTTCTAT
TCCATGACCCCTGTTCTTATACCCTCTTTCCACCACCTTTCCCCATTCCC
CCC
ATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACATTGGTTCCCTGACCTGTGGAGTG
AGGACTATTATGGTTGGAAAGGCTAAATGGAAGGAAGCCTTTAGAGCTGC
CTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGCAGGA
ATTGCAGAAATTACTGCTACTATCAAGGACTGAAGATGCAGGGTTGGTGG
TTCCCACCACTTGTCCCTTTAACTCTCCTATTTGGCCAGTGGAAAAGACA
GATGGATCATCGAGAATGACAGTTGACTATAGAAAACTAAATCAGGTAGT
AACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTTGTTACTTGAGCAAA
TTAACACAGCTCCTTGTACTTGGTATGCAACTATTGATCTAGCAAATGCC
TTCTTCTCAGTACCTGTCCGTAAGGAGCACCAGAAGCAATTTGCTTTCAG
TTGACAAGGCCAGCAATATACCTTCACAGTTTTGCCTCAAGGATATATTA
TCTCTCCTGCCCTGTGTCATACCTTAGTTAGAAGGGATCTTGTCTCTTCC
ACAAAATTGGTGCATTATATTGATGACATTACGTTGATTGGACCCAGTGA
GCCGGAAGTACCCACCCCTTTCGGATCCTTGGGAACACCTATGGTCATCA
CACAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m02.b1 MSMg01no429_m02.b1 CHROMAT_FILE:
MSMg01no429_m02.b1 PHD_FILE: MSMg01no429_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:20 2005
         (448 letters)



>mm_chr5_151676649_151677493
          Length = 845

 Score =  770 bits (398), Expect = 0.0
 Identities = 435/450 (96%), Gaps = 7/450 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggaaaagtgaagccctgccagcttactttccccatctgttccccttctgcccctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cagggaaaagtgaagccctgccagcttactttccccatctgttccccttctgcccctcac 586

                                                                       
Query: 61  tcccagcatcctccaaggttcctgtcctccactttcctgttgctgccttgatctccatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 585 tcccagcatcctccaaggttcctgtcctccactttcctgttgctgccttgatctccacat 526

                                                                       
Query: 121 ctctgtccctcatgtctgagctcactgtggggtgtgcagaaatctcggtataaagctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctctgtccctcatgtctgagctcactgtggggtgtgcagaaatctcggtataaagctaag 466

                                                                       
Query: 181 cactgtgacatgtccagaactcccctccacgttgccagtcccaggcacatggctctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cactgtgacatgtccagaactcccctccacgttgccagtcccaggcacatggctctgtcc 406

                                                                       
Query: 241 ccatgatttgtt--aggagacatagggatgagctgtgacctgaaacctcacagtctggaa 298
           ||||||   | |  |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccatga---ggtgcaggagac--agggatgagctgtgacctgaaacctcacagtctggaa 351

                                                                       
Query: 299 gcttggtctggctgtagttgtacaggggatgcaaatggccagagggacttttcagaatcc 358
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 350 gcttggtctggctgtagttgtacagggaatgcaaatggccacagggacttttcagaatcc 291

                                                                       
Query: 359 agtccagcccctgcctgcctacatggcctgggcatctgccttttcctcctgagaccagga 418
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 agtccagcccctgcctgcctacttggcctgggcatctgccttttcctcctgagaccagga 231

                                         
Query: 419 agtctcacctggcagggcggtggtggtgca 448
           |||||||||||| | ||| |||||||||||
Sbjct: 230 agtctcacctggtatggcagtggtggtgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 845
Length adjustment: 10
Effective length of query: 438
Effective length of database: 835
Effective search space:   365730
Effective search space used:   365730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)