BAC Information

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BAC

Clone NameMSMg01-431A16
Chromosome5 (Build37)
Map Location 29,311,274 - 29,311,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431A16.T7 (MSMg01no431_a16.b1)MSMg01-431A16.TJ (MSMg01no431_a16.g1)
ACCAG523392AG523393
length782800
length of high quality
(start - end)
474 (35 - 508)230 (65 - 294)
definitionCHROMAT_FILE: MSMg01no431_a16.b1 PHD_FILE: MSMg01no431_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:11 2005CHROMAT_FILE: MSMg01no431_a16.g1 PHD_FILE: MSMg01no431_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGCT
GCAGATCACTGTCTCTGTGTTCTTGGAATCAACCCTCTTGCTTTCTTTTT
TTTTTTTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTC
CAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACC
CGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATA
AAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC
ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTA
GTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG
GGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGC
TGACTGTGGCCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCAC
AAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCCAGTGTACTG
CATGGTGTCCAGCGTTTGGAAGCTGAATTATGGGTTGGATCCCCCGAAAA
TAGCAGCCCCTCCTTGGGCCCACCCTTTTACCCCAGTCTCCAAACTTTTG
TTCCTGTTACCCTTCCCCAGGGGTGGTCTTGTCCCCATCCCTTACCGCGG
TACCCTCTCTTTCCCCTTTATCCCTTCACCCTTCTCCCGATCTCTTATTT
GCTACACCACTTCGCACCTTAATCCGTGCTCG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTCCCCATTACTGCCAGTTGGTCATGGGAGTTACC
TTTTAGGCTGGTGGTTTCAGTTCATGGCTATCTGGAGCCATCATTTGGTT
AGGTGAGCAAAGCTTTGCATGGCAGTTAGGAAGAGGAAAGGTTGAGAGCA
AGATGGGAAGTGTGGTGGTTTAAATATACTTGGCCAGGGAGTGGCACTCT
CAGGAGGTGTGGCCTTGTTGGAGGAGGGCGCAGGCTTTAATACCCTCATG
CTAGATGCCTTTTTTTTTTTCTTCTGTTTACCTCTGGACCCATATGTAGA
ACTCTTCTTTCCTCCTGCTTCCTGCCTGCTTGTATGCTGTCATGCTTCTG
CCTTGACGCCCCCCGGATTGAACCTCCTAACCTGGCTCTGTGCCTCATTT
AATCGGCCTTATTATATTTCCCCCTGCTCTTGCCGTCTTCTTCACTCCTT
CCTATACCCTTACTTCCCATTCCTTTTTTTTTCCCCTTTTTTCGCTCCAT
TTCTTCCCCTCCTTCTCCACCTTCCTTTTTTCCTTTTCTTCCCCCTTTTT
TCCTTTTCCCTTCCTTCCTCCCTTTTTCTTCTTTCTCTCTTCTTCCTCCT
TTTTCCCCCCTTTCTCTTTTCCTCTCTCCTCCCTCTTCCTCTCCTTTTTC
ACTCCTTTTCTTTTATCCTCCTCCTTCCCTATGCTCTTCTCCCCCTCTCT
TTTCTCCTCTTTCCCTTCCCCCTCTCCTTTTCTCCTCTTCCTCTCCCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_a16.g1 MSMg01no431_a16.g1 CHROMAT_FILE:
MSMg01no431_a16.g1 PHD_FILE: MSMg01no431_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:11 2005
         (230 letters)



>mm_chr5_29311154_29311783
          Length = 630

 Score =  414 bits (214), Expect = e-120
 Identities = 223/226 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccccattactgccagttggtcatgggagttaccttttaggctggtggtttcagttca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 346 attccccattactgccagttggtcatgggagtttccttttaggctggtggtttcagttca 287

                                                                       
Query: 61  tggctatctggagccatcatttggttaggtgagcaaagctttgcatggcagttaggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggctatctggagccatcatttggttaggtgagcaaagctttgcatggcagttaggaaga 227

                                                                       
Query: 121 ggaaaggttgagagcaagatgggaagtgtggtggtttaaatatacttggccagggagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ggaaaggttgagagcaagatgggaagtgtggtggtttaaatatacttggccagggagtgg 167

                                                         
Query: 181 cactctcaggaggtgtggccttgttggaggagggcgcaggctttaa 226
           |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 166 cactctcaggaggtgtggccttgttggaggagggtgtaggctttaa 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)