Query= MSMg01no431_d07.b1 MSMg01no431_d07.b1 CHROMAT_FILE:
MSMg01no431_d07.b1 PHD_FILE: MSMg01no431_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:24 2005
(534 letters)
>mm_chr5_58119184_58120117
Length = 934
Score = 936 bits (484), Expect = 0.0
Identities = 520/536 (97%), Gaps = 10/536 (1%)
Strand = Plus / Plus
Query: 4 gaattccactctaat-tgccgctccattttgcaccatactctgtcatcaccttgcttcta 62
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 gaattccactctaatatgatgctccattttgcaccatactctgtcttcaccttgcttcta 263
Query: 63 cgacacctgctggagcctgcccttggccgtggggtgtcagccaatcactgtttgttttcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgacacctgctggagcctgcccttggccgtggggtgtcagccaatcactgtttgttttcc 323
Query: 123 ttgttgtgcattatgtttccaagctttttcttacctatttaaggaaaataaatagtttga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgttgtgcattatgtttccaagctttttcttacctatttaaggaaaataaatagtttga 383
Query: 183 aagcaagttaaggtccaaagaggcagtattaatacaggcatgtattattcacagatgtct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagcaagttaaggtccaaagaggcagtattaatacaggcatgtattattcacagatgtct 443
Query: 243 acagttctgttcccaaagagatggctagcaaccatttttt----cttgataggaaaagca 298
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 acagttctgttcccaaagagatggctagcaaccatt----aacacttgataggaaaagca 499
Query: 299 ttcggaagaaaacccccaaacatattttggtaataataataattctaagattttggcttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcggaagaaaacccccaaacatattttggtaataataataattctaagattttggcttt 559
Query: 359 atgtgtaaagggaaattcagcttcttatgtcttcatcgacagtacactaaatactgatct 418
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 atgtgcaaagggaaattcagtttcttatgtcttcatcgacagtacactaaatactgattt 619
Query: 419 caaataaaaccctaaattgatcagtgtttttttctgtgtattgtgatcacaacttttccc 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 caaataaaaccctaaattgatcagtgtttttt-ctgtgtattgtgatcacaacttttccc 678
Query: 479 agctagacagacagttcttgccaaatctgtgttacaattctgaatgttactatgag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agctagacagacagttcttgccaaatctgtgttacaattctgaatgttactatgag 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_d07.g1 MSMg01no431_d07.g1 CHROMAT_FILE:
MSMg01no431_d07.g1 PHD_FILE: MSMg01no431_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:24 2005
(456 letters)
>mm_chr5_58256876_58257730
Length = 855
Score = 835 bits (432), Expect = 0.0
Identities = 450/456 (98%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 1 ttgattactggcatgtggtctagctattttgtggattacctatcacaactaattcccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttgattactggcatgtggtctagctattttgtggattacctatcacaactaattcccaac 596
Query: 61 ttatctgctgccacccagcatatgtctgagtttcagtcagcctcgctgatagcagatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttatctgctgccacccagcatatgtctgagtttcagtcagcctcgctgatagcagatgca 536
Query: 121 ttcttcaggaaagcacatttatgttgatatttctgtacagaatatataatttgaaaattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttcttcaggaaagcacatttatgttgatatttctgtacagaatatataatttgaaaattc 476
Query: 181 attctggtggggtatgaagagaaaactaacaagcattctgaaaaaaaatatgcagaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 attctggtggggtatgaagagaaaactaacaagcattctgaaaaaaaatatgcagaatgc 416
Query: 241 tttctttcttttattgtgagaatcatttgtgtgccaaatataaaagtttagtcttttcaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttctttctttaattgtgagaatcatttgtgtgccaaatataaaagtttagtcttttcaa 356
Query: 301 aacttcattaatgaggatatcgagtgaaaaacataaaaaaaaatttaacaatcaaaggca 360
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 355 aacttcactaatgaggatatcgagtgaaaaacataaaaaaaa-tttaataatcaaaggca 297
Query: 361 gacttttatttgaaagccattcaccatacattatataaagaataagctttgtgtcttaag 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gacttttatttgagagccattcaccatacattatataaagaataagctttgtgtcttaag 237
Query: 421 acattttggaaatagaagagcaatcctcatatgata 456
||||||||||||||||||| ||||||||||||||||
Sbjct: 236 acattttggaaatagaagaccaatcctcatatgata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 855
Length adjustment: 10
Effective length of query: 446
Effective length of database: 845
Effective search space: 376870
Effective search space used: 376870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
