Query= MSMg01no431_i16.b1 MSMg01no431_i16.b1 CHROMAT_FILE:
MSMg01no431_i16.b1 PHD_FILE: MSMg01no431_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:54 2005
(249 letters)
>mm_chr5_125713988_125714636
Length = 649
Score = 253 bits (131), Expect = 5e-72
Identities = 160/173 (92%), Gaps = 9/173 (5%)
Strand = Plus / Plus
Query: 1 cttataaatgagtgagtccaaggtccttgtgtcagaaccagccactcttcttattagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttataaatgagtgagtccaaggtccttgtgtcagaaccagccactcttcttattagacc 260
Query: 61 tgacaaggcagctggctgggcctgaggatcttctctggttgtcttagtgtctctcccctc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaaggcagctggctggacctgaggatcttctctggttgtcttagtgtctctcccctc 320
Query: 121 tctccctctccttctccctctccctctccctctccctc-----tccctcttcc 168
|||||||| || ||||| ||||| ||||| | ||||| ||||||||||
Sbjct: 321 tctccctcccc--ctccccctccc-ctccccc-ccctcccccgtccctcttcc 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_i16.g1 MSMg01no431_i16.g1 CHROMAT_FILE:
MSMg01no431_i16.g1 PHD_FILE: MSMg01no431_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:54 2005
(347 letters)
>mm_chr5_151723648_151724394
Length = 747
Score = 543 bits (281), Expect = e-159
Identities = 326/341 (95%), Gaps = 3/341 (0%)
Strand = Plus / Minus
Query: 1 tgtcttgtttggacgtgtgcaaggtc-ttgtgggagctgttgatgctgtgagttcgtatg 59
||||||||||| ||||| || ||| | ||||||||||| ||||||||||||||| |||||
Sbjct: 744 tgtcttgtttgaacgtgcgc-agg-cattgtgggagctattgatgctgtgagtttgtatg 687
Query: 60 cgcactagcccagtcgtatctggaagattctatttccctggagtcatccaccacctgtgg 119
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 cgcactagcccagtcatatctggaagattctgtttccctggagtcatccaccacctgtgg 627
Query: 120 ctcttaccatctacccacctcctcttccacacagttccctgagctgcaggaaggggtgtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 626 ctcttaccatctacccacctcctcttccacacagttccctgagctgcaggaagaggtgtg 567
Query: 180 atatccacatcctattcaggactgaggaacacacagtatttaacaggcaggtgcagagac 239
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 566 atacccacatcctgttcaggactgaggaacacacagtatttaacaggcaggtgcacagac 507
Query: 240 ctataggagaggaaggtgaggttcaaagaactcataaacctcactacctgatggaaggag 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 506 ctataggagaggaaggtgaggttcaaagaactcataaatctcactacctgatggaaggag 447
Query: 300 ggaaatacaagaccagcactgccatgtgctgtggagggaga 340
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 446 ggaaatacaagaccagcactgtcatgtgctgtggagggaga 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
