BAC Information

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BAC

Clone NameMSMg01-433F14
Chromosome5 (Build37)
Map Location 13,321,012 - 13,321,415
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433F14.T7 (MSMg01no433_f14.b1)MSMg01-433F14.TJ (MSMg01no433_f14.g1)
ACCAG525152AG525153
length719726
length of high quality
(start - end)
504 (58 - 561)404 (67 - 470)
definitionCHROMAT_FILE: MSMg01no433_f14.b1 PHD_FILE: MSMg01no433_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:25 2005CHROMAT_FILE: MSMg01no433_f14.g1 PHD_FILE: MSMg01no433_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
TCTATACCAAAATAAATTAAAAACAATATACAGCAAACCAGTAGCCAACA
TCAATCAAAATGGAGGGAAACATGAAGCAATCCCACTAAAATTAGGGCTT
AGACAAGGCTGCCCACTCTCTCCCTATCTATTCAATATACTGCTTGAAGT
TCTAGCTAGAGCAATTATACAACAAAAGGAGATCAAAGGGATACAAAATG
GAAAGGAAGAAGTCATAATATCACTATTTGCAGATGATATAGTATACCTA
AGTGACCCCCAAAATTTCACTGGAGAACCCTTAAGGCTGATAAACAACTT
CAGCAAACTGGCTGGATATAAAATTAACTCAAACAAGTCATTAACCTTTG
TCTACTCAAAGGATAAACAGGCTGAGAAGCAAATTAGGGAAATGACACCC
TTCACAATAGTCATAAATAATCTTACATATTGGTCTGACTCTTATCAAGC
AAGAGAAAGATCTGTATGACAATAACTTCAAGTCGCTGAAGATAGAGTTT
ATTTTCTTACAAACTGGTCATACATTACTTATCTCTTTGTTTCCCCTTCA
GATACCAGAATAGTATTAATTATAGCCCTACCTGTGTGTCCTAAAACTTG
ACCCAATGATAGCATACTACAAGCCAGGTAAACTGTTGATATGGAACCAG
CTAGCATCTTACCTTGGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATATTCACTTCCACCTCTCATCACTGAGACCCTG
TCTGACTTGAACCTGCATAGGCCTTGTACAGGGAGGGCAGTCTCTGTGAG
TTTATATGTGCCTGAGTCCTGTTGTGTCTGGGAGCTCCTGAGTCCTGAGA
GTGAGCCATTCCTTCCGGCACTTACAGTCTCTCTATCTCCTCTTCCAAAT
AACTTCCTAAGCACCTAGACACTGTCACATACGGCCTTCTGCCCAAACCC
CAGTAAACTGTACAAAATGGTTCTTAACCTTAAGGCTTTGATTTACTACA
AGTGGGCAAAGAGAGTCCAGAAAAATCCTGAAACCGTGGAAAAGGAATTA
GATGACAAAGTATGCTTTATGGAATGGCAAACTGTGATAAAGAACTGACT
GTTCCAGATAAAAACAACAACAACAAAAACAAAACAGAACATAAGAAAGT
ATTAAGTAAAGTAACATGTTAGAAACAGTTTACTGAGTTAGCTATTTTGT
ATATTTAATCTCTTCCAACAATTCACACAGGAACAGTGCTGATAAGCAGA
ATAAATGAATGACCAGGAATGTAATTATTCCTCTAGGAAGAAATCCCTAT
GAATTCTAATTCGGTAGTCTCTGTGAAGGTTTATTTTTAAAATGACAGTC
CAGATTCAGCTTTCACGAAACTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_f14.g1 MSMg01no433_f14.g1 CHROMAT_FILE:
MSMg01no433_f14.g1 PHD_FILE: MSMg01no433_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:25 2005
         (404 letters)



>mm_chr5_13320616_13321419
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattcacttccacctctcatcactgagaccctgtctgacttgaacctgcataggccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atattcacttccacctctcatcactgagaccctgtctgacttgaacctgcataggccttg 741

                                                                       
Query: 61  tacagggagggcagtctctgtgagtttatatgtgcctgagtcctgttgtgtctgggagct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacagggagggcactctctgtgagtttatatgtgcctgagtcctgttgtgtctgggagct 681

                                                                       
Query: 121 cctgagtcctgagagtgagccattccttccggcacttacagtctctctatctcctcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctgagtcctgagagtgagccattccttccggcacttacagtctctctatctcctcttcc 621

                                                                       
Query: 181 aaataacttcctaagcacctagacactgtcacatacggccttctgcccaaaccccagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaataacttcctaagcacctagacactgtcacatacggccttctgcccaaaccccagtaa 561

                                                                       
Query: 241 actgtacaaaatggttcttaaccttaaggctttgatttactacaagtgggcaaagagagt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actgtagaaaatggttcttaaccttaaggctttgatttactacaagtgggcaaagagagt 501

                                                                       
Query: 301 ccagaaaaatcctgaaaccgtggaaaaggaattagatgacaaagtatgctttatggaatg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagaaaaatcctgaaacagtggaaaaggaattagatgacaaagtatgctttatggaatg 441

                                                       
Query: 361 gcaaactgtgataaagaactgactgttccagataaaaacaacaa 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaaactgtgataaagaactgactgttccagataaaaacaacaa 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)