BAC Information

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BAC

Clone NameMSMg01-433L04
Chromosome5 (Build37)
Map Location 79,110,838 - 79,111,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669227, LOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433L04.T7 (MSMg01no433_l04.b1)MSMg01-433L04.TJ (MSMg01no433_l04.g1)
ACCAG525420AG525421
length755829
length of high quality
(start - end)
421 (39 - 459)241 (68 - 308)
definitionCHROMAT_FILE: MSMg01no433_l04.b1 PHD_FILE: MSMg01no433_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005CHROMAT_FILE: MSMg01no433_l04.g1 PHD_FILE: MSMg01no433_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AGTATTTCCAATACTAATCGCATCATGTATGAATACTCTGTGTTACAAAA
TATTTTCTAAGGTTCCTCACTATTTAATTTTCTGCCAAATTGAGACTTGT
AGATAAAATTCTTGAAAATAAATAATTTCAGTTTTCTATAAGCCATAATA
AAATAAAAATAAACATCTTTATAATCATGGAAACAGATATACAAGCTAGA
CAGGAATAGAAATCTGGGTGAAAAAATACACCCAGTCTAAATTGCTATAG
ACTAAAATTTTCTTAATAGGGTAGCTTACTCAGTGTCTCACATTAAACAA
ATGGAAAGGATAGATTCTACATCATCTGTACTTAGGTCGGAGCTCTAACT
TTTGTCTCATAAACCCTCCTTGAGAGAGTGCACATGTGAAATATTGCAAA
ATACTTCTGCGCTTCTACCATTAAGAAGTTTACCTTCCATTCAAAATTCT
CTTCTATTGGACACGGCCTTTTTTGTGCCGAGTTAAGAAAACATTCGATT
CCTATTATCAGAACCATTTCTGTCAGAACGATTATGCTTTCAACCTACCA
TCCATTATTCCCCACCTAATTAACCATCTTTTATGTCCTCCCTTTTCTTC
TCTTTCTCTTCTCCCCCCCCACCCCATCACCTTCTTTTTCTTTCCATTCT
ATCTCGCCCCAATAATACCTCTTTTTTCTTCCCCTACCCCTCCCACCTCC
TTATN
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGGACACATGGTTCTGATTTCAAGCCCCAGAT
CTGCCATTTGCAACCCATGTGGCTTTTATTCATAACTCTCTTTGTGACAC
AGTTTTCTCCTGCATAACAAGAATTTGGGATAGCATTGAAAATGTAAACG
AGGAAAATACCTAATAAAAAATTATCATATCTGTGTTAAAGATTTTCACG
ATAACGCATAGTTAATGATCTTGAGTATTTGGAGTAGGTGTTAATATATA
GGATTATTCTCTCTGCCCGCGCCCGCCCCTCTTCCTTGCCCCGCCTTCCT
CCCTTCTCTTTCCCTTCCGTTTTCCGCTTCTCCGTTTTCCGCGCCCGCCC
CCTTTCTCCTTTCCGTCCCTCCTCGCCTTTTTCCTCTTCCCGCCTTTCCT
CCTTTTTCCCTGCCGCTCCCTCCTCTTCGTCCCCTTTCCCCCTTTTTCCC
GCCTTTCCTTTCCTCCCCTCTTTCCCTCCCTTTCTCTCCTTTCCCCCTTC
TCCTCGTCTCCCCCTTTTTTCCCCCTTCCCCTTCCCCCTTCCCTCCGCTT
TCCCCTTCCCCTTTCTCCCCCTTTCTCTTTCTCTTCTTTCTCTTTTTTTC
TCTCTCGGCCCTTCTTCTTCTCGCCCTCTTTCCCCCTTCCTGCGTCTCTC
TCTCCCTCTCTCCCTTCCGTTCTCCCCCCCTCNCTCTTCCTTTCTTTTTC
GCCTCGCTTTCCCGTTCTTCCGCTTTCCCTCCCTCTTCCCTCATTCCTTT
TCTCCTGCCCTTTTTGCTTTTCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_l04.b1 MSMg01no433_l04.b1 CHROMAT_FILE:
MSMg01no433_l04.b1 PHD_FILE: MSMg01no433_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:52 2005
         (421 letters)



>mm_chr5_79110634_79111454
          Length = 821

 Score =  741 bits (383), Expect = 0.0
 Identities = 409/419 (97%), Gaps = 4/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagta--tttccaatactaatcgcatcatgtatgaatactctgtgttacaaaa 62
           ||||||||||||  | |  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 gaattcatagtaactat--aatactaatcacatcatgtatgaatactctgtgttacaaaa 564

                                                                       
Query: 63  tattttctaaggttcctcactatttaattttctgccaaattgagacttgtagataaaatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tattttctaaggttcctcactatttaattttctgccaaattgagacttgtagataaaatt 504

                                                                       
Query: 123 cttgaaaataaataatttcagttttctataagccataataaaataaaaataaacatcttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttgaaaataaataatttcagttttctataagccataataaaataaaaataaacatcttt 444

                                                                       
Query: 183 ataatcatggaaacagatatacaagctagacaggaatagaaatctgggtgaaaaaataca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataatcatggaaacagatatacaagctagacaggaatagaaatctgggtgaaaaaataca 384

                                                                       
Query: 243 cccagtctaaattgctatagactaaaattttcttaatagggtagcttactcagtgtctca 302
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 383 cccagtctaaattgctatagactaaaattttcaaaatagggtagcttactcagtgtctca 324

                                                                       
Query: 303 cattaaacaaatggaaaggatagattctacatcatctgtacttaggtcggagctctaact 362
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 cattaaacaaatggaaaggatagattctacatcatctgtacttaggttggagctctaact 264

                                                                      
Query: 363 tttgtctcataaaccctccttgagagagtgcacatgtgaaatattgcaaaatacttctg 421
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgtctcataaacactccttgagagagtgcacatgtgaaatattgcaaaatacttctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)