Query= MSMg01no433_n01.b1 MSMg01no433_n01.b1 CHROMAT_FILE:
MSMg01no433_n01.b1 PHD_FILE: MSMg01no433_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:01 2005
(419 letters)
>mm_chr5_151125322_151126144
Length = 823
Score = 768 bits (397), Expect = 0.0
Identities = 415/423 (98%), Gaps = 4/423 (0%)
Strand = Plus / Minus
Query: 1 aaatacagccatgacatgaccacttcttcttttgtttagtttaaatcatacactgctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatacagccatgacatgaccacttcttcttttgtttagtttaaatcatacactgctcca 564
Query: 61 ctttggatggtatcagccattctctaaacccatttcagcagctggccttctgatggagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttggatggtatcagccattctctaaacccatttcagcagctggccttctgatggagct 504
Query: 121 gttgtagacctgcccaactcctggttccttccactaacagtagggtattgaggtcactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttgtagacctgcccaactcctggttccttccactaacagtagggtattgaggtcactcc 444
Query: 181 ctgcctggtgtgcccttccttatgtaccttattagctatgttatggaattttcatccccc 240
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgcctggcgtgcccttccttatgcaccttattagctatgttatggaattttcatccccc 384
Query: 241 cc----acccattacccctgcttaaacaaaacacacctataaaagctcagtgtccgaaac 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccccccacccattacccctgcttaaacaaaacacacctataaaagctcagtgtccgaaac 324
Query: 297 tatctaatagggcagaatgaagccacagatgtccatcctaatttcaaataatttcagtgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatctaatagggcagaatgaagccacagatgtccatcctaatttcaaataatttcagtgt 264
Query: 357 gttctggctacaaccgtcttttcataccaagtgctctgtaatgcctaacaagggtgaagc 416
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 263 gttctggctacaaccgtcttttcacaccaagtgctctgtaatgcctaagaagggtgaagc 204
Query: 417 cgg 419
|||
Sbjct: 203 cgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 823
Length adjustment: 9
Effective length of query: 410
Effective length of database: 814
Effective search space: 333740
Effective search space used: 333740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_n01.g1 MSMg01no433_n01.g1 CHROMAT_FILE:
MSMg01no433_n01.g1 PHD_FILE: MSMg01no433_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:01 2005
(241 letters)
>mm_chr5_150970706_150971346
Length = 641
Score = 424 bits (219), Expect = e-123
Identities = 231/237 (97%), Gaps = 5/237 (2%)
Strand = Plus / Plus
Query: 1 cagttagctttttaatacttccagtttgtttgactcctacacaggaactctaaagtcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttagctttttaatacttccagtttgtttgactcctacacaggaactctaaagtcagt 260
Query: 61 tctaaatccatgccaattaaaggagcaacttttcattcctgaggcgtgaaaccaggctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaatccatgccaattaaaggagcaacttttcattcctgaggcgtgaaaccaggctaa 320
Query: 121 tggcactttggacagtaaatcttctttatttagagataaggtctcagccttcctcaggaa 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tggcactttggacagtaaatcttctttatttagagatagggtctcagccttcctcaggaa 380
Query: 181 ttacagtagtgtgcatgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 237
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagtagtgtg--tgtgt---gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 432
Score = 76.1 bits (39), Expect = 2e-18
Identities = 48/53 (90%), Gaps = 5/53 (9%)
Strand = Plus / Minus
Query: 185 agtagtgtgcatgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 237
||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 108 agtagtgtg--tgtg---tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 61
Score = 56.8 bits (29), Expect = 1e-12
Identities = 39/43 (90%), Gaps = 3/43 (6%)
Strand = Plus / Minus
Query: 189 gtgtgcatgtgt-tttgtgtgtgtgtgtgtgtgtgtgtgtgtg 230
||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 100 gtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 7
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
