BAC Information

Click to search

BAC

Clone NameMSMg01-433P18
Chromosome5 (Build37)
Map Location 79,332,165 - 79,332,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433P18.T7 (MSMg01no433_p18.b1)MSMg01-433P18.TJ (MSMg01no433_p18.g1)
ACCAG525639AG525640
length855777
length of high quality
(start - end)
139 (39 - 177)238 (68 - 305)
definitionCHROMAT_FILE: MSMg01no433_p18.b1 PHD_FILE: MSMg01no433_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:15 2005CHROMAT_FILE: MSMg01no433_p18.g1 PHD_FILE: MSMg01no433_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGCTGTGCAGATATGAATAAGTGATTGTGGGTTTATAAGTCCCCAGCTCC
TCAGCACTTGTCACCATCACCTCAAGCTAAGGTGGCTGCCACTAAGCAGA
TAAACTGTAATTTCTGTCATTTTGCAGCTAGGTCCAGCTGCTGATAACAG
GATTAACGCTAGACCAGGTAGAATACCTCATGCTCTTCCACCTCTTAATC
CTCCAAGCTATATGACACACTCAATCTCCTTTATGTCCCCCGCTCCCCCC
TTATCTCCTTCTTCTCCCCTTTTTCCCTCCCTTCCGTCCTTCCTCCCTCT
TTTCCGCCCTCCCCCCTTCCTCACCCTTATCCCATCTCTCTCCTTCCTTT
TCCCATTCTTTCATTCTACCCCCCCCCCCCCCTCCTTCCCCTATTCCTCT
ACTTTACTCCCTCCCACATACTCACTTCCCTTCCCCTCATTTTCTACTCC
CTCCTCCTTACTTCCCTCTCATACACCCCATCCCTCCTCCCCTTCCTTTT
TCTCTCCCCACCCCATTCTTACTACCCCCTCCTTAATTCTCCCTTTCTTC
TTCTTCTCTTCTTTCTATCTTTTCCTCCTACCCCTCTCTCCTCTCTCTCC
CCATTCTCCCCTTTCTTATTCTCCTATCCTAATCTTAATTTTCTCGCCCC
GCCTTCCTTTTCCCTTCTCTCTTCTTCCCTTCCCTCTTCTCTTCTTTTTT
TCTACACATCCCCCCCCCCTCCCCACCGACCATCATCTATCTTCCCTTCT
CTCCCCCCCTCCTCCCTCTTTCTTTTTCTTCCCCTCCTCCTCCCACCTCC
CTTCN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACTATCATCATGAGATA
TGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGAT
TGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTT
CTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGA
GTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGCTGATTTT
GTTACTTTTTTTTTGCAGGCGTGGGAGTCTAGCTCTCCTCTCTGACTTTC
TTTGTTTCTATCATTCTCTGCTTTCCTTTTCTCCTCTCCCCAGCCTATGT
GTACTTTCTCCCTCCTTCCTTTTTTTCTTTTCCTTTTGCGCTTTTTCCCC
TTTCCTTTTGTCTTTTTTCTCTTTCCCTTTTTCCCCCTTTCCTTCCTTCG
GTCTTTCCCTCTTTTCTTTTTTCACCTTTCCTCCTTCCCCTTTTTTCTCT
TCCTTTCCCTTTCTCTTCTTCTCTTTCCCTTTCCCCCCTTCCATTTCTTC
TTTTCTTTTTTCCTCTCCGCTCTCTTCTTCCCTCCCTTTCCTCTCTCCCT
CTTCCCTTTTCCTTTCTCTCTTCCTTTTCCTCCCTCTCCTTCCCTCTTCT
CCCCTTCCTTTCCCCTCGTTCCTTTTCCTCCCTCTTTCTTCTTCCATTTC
TCTTCTCCTATTTCCTTTCCCGCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_p18.b1 MSMg01no433_p18.b1 CHROMAT_FILE:
MSMg01no433_p18.b1 PHD_FILE: MSMg01no433_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:15 2005
         (139 letters)



>mm_chr5_79331961_79332499
          Length = 539

 Score =  217 bits (112), Expect = 3e-61
 Identities = 127/132 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgctgtgcagatatgaataagtgattgtgggtttataagtccccagctcctc 64
           ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 205 gaattcactgctgtgtagatatgaataagtgattgtgagtttatatgtccccagctcctc 264

                                                                       
Query: 65  agcacttgtcaccatcacctcaagctaaggtggctgccactaagcagataaactgtaatt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 agcacttgtcaccatcacctcaagctaaggtggctgccactaagcagataaactataatt 324

                       
Query: 125 tctgtcattttg 136
           ||| ||||||||
Sbjct: 325 tctttcattttg 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)