Query= MSMg01no434_i10.b1 MSMg01no434_i10.b1 CHROMAT_FILE:
MSMg01no434_i10.b1 PHD_FILE: MSMg01no434_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:58 2005
(405 letters)
>mm_chr5_143001580_143002384
Length = 805
Score = 731 bits (378), Expect = 0.0
Identities = 398/410 (97%), Gaps = 10/410 (2%)
Strand = Plus / Plus
Query: 1 atctggccagtgttttagttccaggttgtttggcatttatttttattgtgtttgtaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctggccagtgttttagttccaggttgtttggcatttatttttattgtgtttgtaatgg 260
Query: 61 agaaatacattatctgctttcaaaattgtgctcgaaaatacaaggagtacagataccacg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatacattatctgctttcaaaatcgtgctcgaaaatacaaggagtacagataccacg 320
Query: 121 taacagaaaactccagtcaggagacgctatgcacatcacatgaaaaaatagtctggtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagaaaactccagtcaggagacgctatgcacatcacatgaaaaaatagtctggtatt 380
Query: 181 cacgtaatataaactagacttcaaaagtcccaagtttccagcttggtttaaaaaaaaaac 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgtaataaaaactagacttcaaaagtcccaagtttccagcttggtttaaaaaaaaaac 440
Query: 241 aggcatatttacacttttta-----tttaataaacatttttccagtgtgtaaacaaaatg 295
|||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcatatttacac-----aaaacatttaataaacatttttccagtgtgtaaacaaaatg 495
Query: 296 aggagactaaatttgtgcctggctgtctccagcagacaccatggctgtttggaatgcagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggagactaaatttgtgcctggctgtctccagcagacaccatggctgtttggaatgcagg 555
Query: 356 agccatgcactttcttatgctggtggaagggcagggtgaacatgcacaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agccatgcactttcttatgctggtggaagggcagggtgaacatgcacaga 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_i10.g1 MSMg01no434_i10.g1 CHROMAT_FILE:
MSMg01no434_i10.g1 PHD_FILE: MSMg01no434_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:58 2005
(248 letters)
>mm_chr5_143152204_143152854
Length = 651
Score = 470 bits (243), Expect = e-137
Identities = 248/251 (98%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 1 acccagggcctgttggacttgagacaagcactctgccaactaagctacattcacagctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acccagggcctgttggacttgagacaagcactctgccaactaagctacattcacagctac 449
Query: 61 aattcatcctgtgaaacaaatagtacattcact---gcatggagcggctaccgcctctac 117
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 448 aattcatcctgtgaaacaaatagtacattcactggagcatggagcggctaccgcctctac 389
Query: 118 ttgctcagagcccgtgcctcacctagaagaagacccccattagcattttttgccccatca 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgctcagagcccgtgcctcacctagaagaagacccccattagcattttttgccccatca 329
Query: 178 ggtctacactggaacccactgcctgtgctaaggagtttgtccttcctgaaccacagacta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtctacactggaacccactgcctgtgctaaggagtttgtccttcctgaaccacagacta 269
Query: 238 cacaagctttg 248
|||||||||||
Sbjct: 268 cacaagctttg 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 651
Length adjustment: 9
Effective length of query: 239
Effective length of database: 642
Effective search space: 153438
Effective search space used: 153438
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
