BAC Information

Click to search

BAC

Clone NameMSMg01-435B02
Chromosome5 (Build37)
Map Location 79,030,811 - 79,031,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669227, LOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B02.T7 (MSMg01no435_b02.b1)MSMg01-435B02.TJ (MSMg01no435_b02.g1)
ACCAG526458AG526459
length745757
length of high quality
(start - end)
508 (44 - 551)421 (77 - 497)
definitionCHROMAT_FILE: MSMg01no435_b02.b1 PHD_FILE: MSMg01no435_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005CHROMAT_FILE: MSMg01no435_b02.g1 PHD_FILE: MSMg01no435_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGTACCCCACTTTTAAAAGGATTATTTGATTCTCT
GGAATCTAACTTGAGTTCTTTGAAAATATTGGATAATACCCCTCTATCGG
ATGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGCTGCCACTTTGTC
CTATTGACAGTGTCCTTTGCCTTACAGAAGGATTGTAATTTTATGAGGTC
CCATTTGTCAATTCTTGATATTAGAGCATAAGCCATTGGTGTTCTGTTCA
GGAAAATTTCCCCTCTGCCCATGTGTTTGAGGATCTTCCCCACTATCTTT
TCTATTAGTTTCAGTGTATCTAGTTTTATGTGGAGGTCCTTGATCCACTT
GGACTTGAGATTTGTACAAGTAAATAAGAATCGATCGATGTGCATTCTTC
TACATGCTGACCTCCAGTTGAACCATCATCATCTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCTTTGTTAAAGATCAAGTGATCATA
GGTGTTTGGGTTCAGTTTTTGCCCCCCCATTCTATCTCCTTGATCTTGCT
GCTCGCCCCCGTTCTACAATTTAACCCTCTTTATTCACATCGCTTTTAAT
TACCCCCTTACGATTTCCCCTTTTTTTTCTTCTTTACCCCCCTCCCCCCC
TTTTATTTTTTATCCCCCTTTTTATTCTTTTTTTCCCCCCTCCCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTTTTTTTTGCCATTCACT
GTAGCCTAAGATTTTGTTGTATTTTTTGCTTCTACAAACTTCACCTATAT
TAAAGTCCTGTTTCCTAGTTGAGATTCCCATTAAATCTCAGCATGGAGTT
GTAGGTTCCATTTGGCGCTGTATAAAGCCTCTCCTTCTATAGCTGACCTT
GCTTTTGTTCTGTGTAGAGCAACTGAATCAGGCACACTTGATCTACCTTA
AACAAGCCCATGGGTATTGATATTTTGAAAAAATTCTTTATAGCTATCTG
TATCCTTCATATGCTGTTCTCTTAGGGGGGAAAACAATTCACTCTTTAAA
CCATTTTCTTAATGATAAAATCAAGGATTCTTATACTTGAAATGCACTGG
GAAGTATTTGTTTTATATTCCTACCTGACCCTGACACTGAATATCAAGGC
CTTCTAGCAAAGAGTCAGCTAACTTNAAAATTATAGCCTACTGGCTAACC
CTTATTTCTCCTCCTNNNNNTTGCTTTCTTCCTCCCCCTTTTTTTTATTA
TTTTCTTTTCTATCCCCTTCCGTTTTTTTCTTATCCCCTATTTTTCCCCT
CTCTTCCCCCCCTTCTTTGTCTCTCCGTTTTTTTATTTTTTTCTCTCTCC
CCTCTCCTTTTTTCTTTCTTCGCTCCTTTTTCCCGCTATTTGTATTCTTT
TCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b02.g1 MSMg01no435_b02.g1 CHROMAT_FILE:
MSMg01no435_b02.g1 PHD_FILE: MSMg01no435_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:40 2005
         (421 letters)



>mm_chr5_79030607_79031427
          Length = 821

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttttttttttgccattcactgtagcctaagattttgttgtattttttgcttctacaaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttttttttgccattcactgtagcctaagattttgttgtattttttgcttctacaaact 562

                                                                       
Query: 65  tcacctatattaaagtcctgtttcctagttgagattcccattaaatctcagcatggagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacctatattaaagtcctgtttcctagttgagattcccattaaatctcagcatggagtt 502

                                                                       
Query: 125 gtaggttccatttggcgctgtataaagcctctccttctatagctgaccttgcttttgttc 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gtaggttccatttggcgctgtataaagcctcttcttctatagctgaccttgcttttgttc 442

                                                                       
Query: 185 tgtgtagagcaactgaatcaggcacacttgatctaccttaaacaagcccatgggtattga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 tgtgtagagcaactgaatcaggcacacttgatctaccttaaacaagcccatagttattga 382

                                                                       
Query: 245 tattttgaaaaaattctttatagctatctgtatccttcatatgctgttctcttagggggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttgaaaaaattctttatagctatctgtatccttcatatgctgttctcttagggggg 322

                                                                       
Query: 305 aaaacaattcactctttaaaccattttcttaatgataaaatcaaggattcttatacttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacaattcactctttaaaccattttcttaatgataaaatcaaggattcttatacttga 262

                                                                    
Query: 365 aatgcactgggaagtatttgttttatattcctacctgaccctgacactgaatatcaa 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcactgggaagtatttgttttatattcctacctgaccctgacactgaatatcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)