BAC Information

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BAC

Clone NameMSMg01-435C12
Chromosome5 (Build37)
Map Location 125,322,261 - 125,483,391
singlet/doubletdoublet
Overlap geneCcdc92, Zfp664
Upstream geneGpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435C12.T7 (MSMg01no435_c12.b1)MSMg01-435C12.TJ (MSMg01no435_c12.g1)
ACCAG526526AG526527
length826760
length of high quality
(start - end)
186 (67 - 252)322 (77 - 398)
definitionCHROMAT_FILE: MSMg01no435_c12.b1 PHD_FILE: MSMg01no435_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:47 2005CHROMAT_FILE: MSMg01no435_c12.g1 PHD_FILE: MSMg01no435_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,483,208 - 125,483,391)(125,322,261 - 125,322,582)
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTCTGTACACGGGAAGCCTGGGGCCACTTGGGCGCGGGGAATGAAG
GACACCTGATGTGTAGCTGGCATTCCCTTGGCCAGCCCTCCTGTCTCTGT
TTAATCCTCCCAGTCGGCCTGTGAGTGCCTGCTTGCAGACGCTCTCCATT
TTCTGGAGGAAACTGAACTACAGAGATGGTTAGGAAGTTGCCCAAAAGTG
TGGAGGGGGGAGGGCACCTCTTTTTTTCCCTTATGCCGCTAGCCCGATAC
TTTCTACTTTTTTTTTTTTCTTCCTCATTTTTCTTTTTCCTTCCCCTTTT
ATTTTTTTTTCTTCCCTATTTTCTCCCCGTGGTTCCTTCCTGTTCTCTTC
TTATCGCTCTTCCCCCCCCTATTTTGTTTCCCCCTTTTCTTATTTTCCTA
CTTTACGCCTTCCTCTTCTCTTCCTTCCTAATCCTTTTCCCCTATTTACC
TTTTTTTATTTTTTTTTCTTTCCCCTACTCTTCTTCCTTCTTTACCTTTT
CTTTCCTACTATTACTCCCCTTTCACCTTCCTCCTTTTTCTTCCCACTCA
CTAATAAATTTCCCTTTTATTCCTTTCCTCCCCCCTCCTTTATTTCCCTC
TTCCTTTTTCACTTTTCCTTTTTCCCTTTCCCATCCTTCTTCCTTTATTC
CCGCTTTATTCTTCCTTCCTTCTTCACAACTTCATCTCTTTTTTATTTCC
CATTCTTTTCTCTCTCTTCCTCACCGCCCCCCTTATCCACTAATTTAACC
CCCTCTTTCTCTTTTTTTTTCATTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCGTCTTCATGCTGCAGTTC
TTACCCTCGAGCAAAAGTAGGTGTGCAAGGAGTGCAGCGCAGCACAAGCC
TGGGGAGGCTTGCAGGGTCCTGAGCATATGAATGCACTCTGACAACAGGA
GACGTCCCATGGTAGTCATGACTGTCTAGGTCCTCTTATGTCCATCCTCT
GGGATTCTCTACGAGGTACCAAAGAGGAGATCCACCTGTCTAGGTTAGGT
CTATGGGGCAAGGCATGTTCTCATGGGGCTGAACTTTGTCTAGATGGCTA
AGTGACTTTCTCACTTGCTGGGTAGTGCTACTGGATCCCTGAGGGAAAGC
ACTGCATATCTTAACACCATGCTGTTACTTTGCTCCTGAGCTACTGATAC
CAGGCCATCATTAGAGATGATGCTCAGGCCATGGAGCTGTTTCCCACCTT
TCTTTTTTTACCCCATTTCCGCAACAGATGTCCTTGCTCGTTACCTCTAT
TGTTTGTTGTCTCGTCTTCCTCCCTTTTCTCATTCCCCCCTTTTTTTTCC
CCCTACCTCAATCCTCCCACCCTTTATTTACTACGCCATCCCTTTTTTTT
TTCCTTACTATACACGTTTTCTCCCCCTCCACTTGTTTACTTTTTTTCCC
TCTTACTCCCTTTCTCTTTTCTCCTTCCCTTTTTCATTCCTCTTTTTTTC
TCTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_c12.b1 MSMg01no435_c12.b1 CHROMAT_FILE:
MSMg01no435_c12.b1 PHD_FILE: MSMg01no435_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:47 2005
         (186 letters)



>mm_chr5_125483066_125483651
          Length = 586

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcctggggccacttgggcgcggggaatgaaggacacctgatgtgtagctggcattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaagcctggggccacttgggcgcggggaatgaaggacacctgatgtgtagctggcattcc 267

                                                                       
Query: 61  cttggccagccctcctgtctctgtttaatcctcccagtcggcctgtgagtgcctgcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttggccagccctcctgtctctgtttaatcctcccagtcggcctgtgagtgcctgcttgc 207

                                                                       
Query: 121 agacgctctccattttctggaggaaactgaactacagagatggttaggaagttgcccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agacgctctccattttctggaggaaactgaactacagagatggttaggaagttgcccaaa 147

               
Query: 181 agtg 184
           ||||
Sbjct: 146 agtg 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no435_c12.g1 MSMg01no435_c12.g1 CHROMAT_FILE:
MSMg01no435_c12.g1 PHD_FILE: MSMg01no435_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:47 2005
         (322 letters)



>mm_chr5_125322061_125322782
          Length = 722

 Score =  561 bits (290), Expect = e-164
 Identities = 314/322 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtcgtcttcatgctgcagttcttaccctcgagcaaaagtaggtgtgcaaggagtgca 60
           ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 201 actgttgtcttcatgctgcagttcttaccctcgagcaaaagcaggtgggcaaggagtgca 260

                                                                       
Query: 61  gcgcagcacaagcctggggaggcttgcagggtcctgagcatatgaatgcactctgacaac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgcagcgcaagcctggggaggcttgcagggtcctgagcatatgaatgcactctgacaac 320

                                                                       
Query: 121 aggagacgtcccatggtagtcatgactgtctaggtcctcttatgtccatcctctgggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagacgtcccatggtagtcatgactgtctaggtcctcttatgtccatcctctgggatt 380

                                                                       
Query: 181 ctctacgaggtaccaaagaggagatccacctgtctaggttaggtctatggggcaaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctacgaggtaccaaagaggagatccacctgtctaggttaggtctatggggcaaggcat 440

                                                                       
Query: 241 gttctcatggggctgaactttgtctagatggctaagtgactttctcacttgctgggtagt 300
           |  | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gcacacatggggctgaactttgtctagatggctaagtgactttctcacttgctgggcagt 500

                                 
Query: 301 gctactggatccctgagggaaa 322
           ||||||||||||||||||||||
Sbjct: 501 gctactggatccctgagggaaa 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)