BAC Information

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BAC

Clone NameMSMg01-435D01
Chromosome5 (Build37)
Map Location 116,956,888 - 116,957,253
singlet/doubletsinglet
Overlap gene1500001A10Rik
Upstream genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
Downstream geneLOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435D01.T7 (MSMg01no435_d01.b1)MSMg01-435D01.TJ (MSMg01no435_d01.g1)
ACCAG526552AG526553
length756795
length of high quality
(start - end)
366 (68 - 433)169 (76 - 244)
definitionCHROMAT_FILE: MSMg01no435_d01.b1 PHD_FILE: MSMg01no435_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:50 2005CHROMAT_FILE: MSMg01no435_d01.g1 PHD_FILE: MSMg01no435_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATAATTTGTGGCGCTATACGACTCCTATTTCCAGAGGATCCGCGGA
ATTCTCTGATGTCCCTAACTGTGTGCTCCACGAGATAAGGAGATTAATCA
GTCCATTACACAGGGGCTGTTTTACACACAGATGGAGGTAATTGAACAGA
GACATCGGGCACCTCCAGATCTTGCCGGGCATCCAGTCTACTCAAGTGGC
AGGCGGTGGCTGGCCTGTGGGCAGCCAGGACATCTCCAAGACAGAATAAG
GACTGTTACTGTCAGATGCTCACACACTCTGAGGCTCCTTAGGTCCCAGG
CACTTGACCCTCATCGGTCCCCTGTTGTTCCGTGAAGCAACCGCCATTCC
GTGCCCTGTTACAGTTGAGGCTGAGCTACCTCGAGACTCTGTCCGAAGCA
TTCTTCAAAGTTCAGATCTGAATCTAACTGAGGTAGAGGCCGCCATGGTG
GGTAACACTTGTTGCATTTGACTAGAACCACGAACAGAGATTGGTTCTCT
AAGTGAGCAGCCAACTTGGCCATCTGCATTGACGCAAGCCATCCCACGAT
TCTCATACTTGCTTTCCCCGTCATTCCCATCCTTCCTCAACTGTCTTTTA
GGATCTTCTGGCCCTTTTTTTACTGCAACTCTTTTTACTTCTATTCTCCG
CCTTTTCCTACCCATGTCCCTTTTCTTTCTCTTTCTCCAACCTTCCCTCT
CCCCCCCGTTAGCCGCGGGCGGGGGGGGTTGCCGGTGGGTGGCGGGCGTC
GCCCCN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTCTGGCTTCTCCTTAGTCACG
TGGCTGGTGCCTGCCCCCACACACCCAATACCATTTCTCACATGAAGTTC
ACAACTTCTTCTGGCTTGTGCAGTCTTTTTGCCCCCTTTTCTGTGATGTC
CAACTGAGGCATGTGTGTCTGTTTGTGTGTGTATGTGTGTATGGNNTTNT
GTANTGTTTTCCCGCGGGGTGGGCGCGTACGCGTAACTGATACAGTACGG
CGCGATATAGCGGGATTTTTTGTTTAGAATAAACTACTTTTTAGTGCGCT
GATGGCGTGTTATTTTGTATAGGGTTTCAGTCTCCCGCGCCCTTGGTGTC
TGGATGTAGGATGGTGGTTGGGCCCCCCCCCCGTGTCACACAAGCTTATC
TGTGTTGCTATTGTTCCCCGCTCATGCTTTTTCGTGTTGCTATCCGGCCC
CCTTTTATTCTTTCTTTCTTTTTCCCCGTACCTCATTTTTACTTTTTTTT
TTTACCCTCCCCGTTCCTCACTTTATTATTTATTTCTTCCCCTATCCCCT
CTTTTTTATCTTTATTTATTCTGCTCACCCCCTTCTATTTTCTCCTTTTT
TTACTCTTATCTTTTTTTTATTTCCGCCCGTCCTTTCACGCTTTATCAAT
CCGCTCCTAATCACCCCCCCGACCACTCGTATGGTCCTATCCACTATATT
TGGATGTTCCCATTTCATCCTCTTATCTTTCTTCTTCCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_d01.b1 MSMg01no435_d01.b1 CHROMAT_FILE:
MSMg01no435_d01.b1 PHD_FILE: MSMg01no435_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:50 2005
         (366 letters)



>mm_chr5_116956688_116957453
          Length = 766

 Score =  654 bits (338), Expect = 0.0
 Identities = 359/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtgctccacgagataaggagattaatcagtccattacacaggggctgttttacac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 566 actgtgtgctccacgagataaggagattaatcagtccattacacaggggctgttttaccc 507

                                                                       
Query: 61  acagatggaggtaattgaacagagacatcgggcacctccagatcttgccgggcatccagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 acagatggaggtaattgaacagagacatcgggcacctccagatcttgctgggcatccagt 447

                                                                       
Query: 121 ctactcaagtggcaggcggtggctggcctgtgggcagccaggacatctccaagacagaat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctactccagtggcaggcggtggctggcctgtgggcagccaggacatctccaagacagaat 387

                                                                       
Query: 181 aaggactgttactgtcagatgctcacacactctgaggctccttaggtcccaggcacttga 240
           ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 386 aaggactgttactgtcacatgctcgtacactctgaggctccttaggtcccaggcacttga 327

                                                                       
Query: 241 ccctcatcggtcccctgttgttccgtgaagcaaccgccattccgtgccctgttacagttg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 326 ccctcatcggtcccctgttgttccgtgaagcgaccgccattccgtgccctgttacagttg 267

                                                                       
Query: 301 aggctgagctacctcgagactctgtccgaagcattcttcaaagttcagatctgaatctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggctgagctacctcgagactctgtccgaagcattcttcaaagttcagatctgaatctaa 207

                 
Query: 361 ctgagg 366
           ||||||
Sbjct: 206 ctgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)