TCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGXXXXXXXXXXX
XXXXXXXXXXTTGCTCCCGTTTCCTCATATAACCAACATAATGTGGGAAG
CTTTCATGGGCCAGTGAGATTCCCTTGGAAACGGTTTTAGCAGGTCATAC
TTCCCTCTATCTATATCTCTGTGCATTAGCTTTAAGGGATCAACACATCC
TTGAATCATCTGGGAAGAACACCTTAGTGGGGGATTGTCAATATTGGACT
GAACTATGAGTGTGTCTGTAGGAAATTATATTAAGTCAGTTGACATGGAA
AGACCAAGCTCACATTTTTTGGTCCTATTGCTTACACATGGAGTCTGAAC
TGTCTATTAATGAGTGCTTGACCTGGCCACAAGTAAGTAAGAAAACATAT
ACTTATTCTTTCCTCCCCCTATTCTTGGTGTGGTCCAAATATAATTTCCC
TGTCCGTTTTTCTTTCCCCTTTCCTTCTTTTCTTCTTGTCCCATTTATCC
CCTATTGCTTCCCACCTCTCATTTGTTCTCCTTCCCTTTGAATATTTCTA
ATCTCCGCATTTTTTTTTCCCCCCCCCTCCTCTCTCATTTCTTTTCCCAC
TTTCCTTTCTTTTTCCTTTCATTTACCCTTTCCTCTTCTCCTTCCTTTCT
TCCCCTTTTATTTTTCACCCTCTTTTTTTTTCTTTCCTTTTCCCCCCTTT
TTTCCTCCACCTTTCTCACTTCTTTCCTTTTCTTTATTCCCTACCTTTCC
TTCTCTCCCCCTTTTTTTCTCTTCCCCTTTATCTTCCCCTTTATCTTCCC
CCCATTTTTTTCTA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCATTTTTAAGGGACCTCGGCT
CAGAACAAAAGAGGAATTGTTGTTTCATCAACAAGAAGAACCAGGACAAG
CCAGATAAAGCAGAGTTGATGATTTTATTTAAGATATTTAGAAAAAAATG
TATTATATGTACCATGAATACTCTATCTGCATGTACACCTGTATGCCAGA
AGAGGGCATCAGGTCATACTATAGATGGTTGTGAGCTACCACGTGCTTGC
TGGGAACTGAACTCTTTTTTTTTTGGAAAAGCAGCCAGTGCTCTTAGCCA
CCGAGGCTTCTCTAGCCCCCTACTTGAACTATTTTAATATCGATTCTTTG
CTACTCGGCCTTTTCTCCCCCCCCCCTGATCCTTTCCTAACTACCTTTCT
CTATCCCTGGTCTATCTTTCCCCTATTTTTTTGGTCTCGCTTACCGTCCC
CCCTTTCTCTTCACCCTTTCTCCCCTGTTCCTCTTTTTCCATTTTCTTTC
ACCTACCCCCCCCCGCTCTTTTTTTTATTCCAATCTCCCATCTGTCCCTC
CTTTTTTCTCTCCTTTCCCTTTTCACTCCACCCCTGTCGTCTCCCTTCTT
TTCTTTTTTCTCTTTTTCTTTCCCTCATTCCTCCCTTTTTCTATTTTCCT
GTTTATCTTTTTCCCTTCTCACTCTCTCCCCCTTCCCCCCCGTCAGCGAC
CGTACCCAATCTTTTCTTTGTATTCCCTTTCCCTCTCCTCTTTTATTTTT
TCTCCTCTCTCCTTT

Query= MSMg01no435_h11.b1 MSMg01no435_h11.b1 CHROMAT_FILE:
MSMg01no435_h11.b1 PHD_FILE: MSMg01no435_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:13 2005
         (249 letters)



>mm_chr5_133721597_133722245
          Length = 649

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttcctcatataaccaacataatgtgggaagctttcatgggccagtgagattcccttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 446 gtttcctcatataaccaacataatgtgggaagctttcatgggccagcgagattcccttgg 387

                                                                       
Query: 61  aaacggttttagcaggtcatacttccctctatctatatctctgtgcattagctttaaggg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaacagttttagcaggtcatacttccctctatctatatctctgtgcattagctttaaggg 327

                                                                       
Query: 121 atcaacacatccttgaatcatctgggaagaacaccttagtgggggattgtcaatattgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 atcaacacatccttgaatcatctgggaagaacaccttagtgggggattgtctatattgga 267

                                                                       
Query: 181 ctgaactatgagtgtgtctgtaggaaattatattaagtcagttgacatggaaagaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 ctgaactatgagtgtgtctgtaggaaattatattaagtcagttgacatgtaaagaccaag 207

                 
Query: 241 ctcaca 246
           ||||||
Sbjct: 206 ctcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no435_h11.g1 MSMg01no435_h11.g1 CHROMAT_FILE:
MSMg01no435_h11.g1 PHD_FILE: MSMg01no435_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:13 2005
         (218 letters)



>mm_chr5_133607200_133607817
          Length = 618

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcatttttaagggacctcggctcagaacaaaagaggaattgttgtttcatcaacaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctttcatttttaagggacctcggctcagaacaaaagaggaattgttgtttaatcaacaag 260

                                                                       
Query: 61  aagaaccaggacaagccagataaagcagagttgatgattttatttaagatatttagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaccaggacaagccagataaagcagagttgatgattttatttaagatatttagaaaa 320

                                                                       
Query: 121 aaatgtattatatgtaccatgaatactctatctgcatgtacacctgtatgccagaagagg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatttattatatgtaccatgaatactctatctgcatgtacacctgtatgccagaagagg 380

                                                 
Query: 181 gcatcaggtcatactatagatggttgtgagctaccacg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatcaggtcatactatagatggttgtgagctaccacg 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)