Query= MSMg01no435_k09.b1 MSMg01no435_k09.b1 CHROMAT_FILE:
MSMg01no435_k09.b1 PHD_FILE: MSMg01no435_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:28 2005
(445 letters)
>mm_chr5_132986416_132987260
Length = 845
Score = 808 bits (418), Expect = 0.0
Identities = 439/446 (98%), Gaps = 3/446 (0%)
Strand = Plus / Plus
Query: 1 gcaggcggaaactgaggcaaaaatcatggagctctgctgttcctcctggattgctcagcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcaggtggaaactgaggcaaaaatcatggagctctgctgttcctcctggattgctcagcc 261
Query: 61 tgttttcttatacaacccaagactacctgccctgtccaaatggtctgtctgtaccctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgttttcttatacaacccaagactacctgccctgtccaaatggtctgtctgtaccctccc 321
Query: 121 acatcaatcactaatcaaggcaatacccacccacagacttgcctacaggccaatcttaga 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 acatcaatcactaatcaaggcaataccc-cccacagacttgcctacaggccaatcttaga 380
Query: 181 gaggcattttctccattaagattccctcttcccaggtacgttgaggtttgagtcatggtg 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaggcattttctccattaagattccctcttcccaggtatgttgaggtttgagtcatggtg 440
Query: 241 acaaaaacaaccagaataacaaaacatgtggtgattgtgaactaaacaacacccacaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaacaaccagaataacaaaacatgtggtgattgtgaactaaacaacacccacaact 500
Query: 301 gagtagttaaaaagataaagataaatttacaagaagcagctctgaactttgaactgtata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtagttaaaaagataaagataaatttacaagaagcagctctgaactttgaactgtata 560
Query: 361 tacatcactcaaaaccctctccccggaaaacccacgtaagcactctctcttcaggatggc 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 561 gacatcactcaaaaccctctcccctgaaaacccacgtaagcactctctcttcaggatg-c 619
Query: 421 -gagtaaccagaggtcactcactatc 445
|||||||||||||||||||||||||
Sbjct: 620 agagtaaccagaggtcactcactatc 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_k09.g1 MSMg01no435_k09.g1 CHROMAT_FILE:
MSMg01no435_k09.g1 PHD_FILE: MSMg01no435_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:28 2005
(293 letters)
>mm_chr5_133138825_133139517
Length = 693
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 5 tataaccaagagaattagcaatcttctggtgatcctcctgtcacagtctccatgagttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tataaccaagagaattagcaatcttctggtgatcctcctgtcacagtctccatgagttta 433
Query: 65 taaaagcatgagacaatacactcagcactctccctcaaggactgtgaggaaagcctccat 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaaagcatgaggcaatacactcagcactctccctcaaggactgtgaggaaagcctccat 373
Query: 125 ctagatggtcctcactgttgtaccaatccaccttgaccagatggccaggaccaactaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctagatggtcctcactgttgtaccaatccaccttgaccagatggccaggaccaactaccc 313
Query: 185 agaacacagacctttcctgttgcaacccttgtttacaatctttcaacaagcccacctatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agaacacagacctttcctgttgcaacccttgtttacaatctttcaacaagcccacctatg 253
Query: 245 tatcaaggctctcccttagagaagagggagaagaggagggggaggaga 292
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatcaaggctctcccttagagaagagggagaagaggagggggaggaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
