Query= MSMg01no436_b09.b1 MSMg01no436_b09.b1 CHROMAT_FILE:
MSMg01no436_b09.b1 PHD_FILE: MSMg01no436_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:04 2005
(627 letters)
>mm_chr5_37864718_37865744
Length = 1027
Score = 1158 bits (599), Expect = 0.0
Identities = 617/623 (99%)
Strand = Plus / Minus
Query: 5 gaattccagagacatgccactatattcaccaggacccttagacaagaagggactggctga 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattccagagacatggaactatattcaccaggacccttagacaagaagggactggctga 768
Query: 65 cagaaagcacccaagggaacagatttgaccactaatcaaggaagatgaacttggtgaggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cagaaagcacccaagggaacagatttgaccactaatcaaggaagatgaacttggtgaggc 708
Query: 125 atgaatagataacacagtacctgcttggtacaaattggggtagcagtggtaaacattact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 atgaatagataacacagtacctgcttggtacaaattggggtagcagtggtaaacattact 648
Query: 185 tgtcttggacaaatagaaaaacccaaaccatctatggagcagtctacaggatgagcattc 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 647 tgtcttggacaaatagaaaaacccaaaccatctatgtagcagtctacaggatgagcattc 588
Query: 245 caaatgtagaaatctcaacctcaaattcaaaaacttgtagtactgacatggtggcactta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 caaatgtagaaatctcaacctcaaattcaaaaacttgtagtactgacatggtggcactta 528
Query: 305 cacctgacctcatgtgacaggccacactgaaaacataagtaccctagaactttgtaaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cacctgacctcatgtgacaggccacactgaaaacataagtaccctagaactttgtaaaat 468
Query: 365 tatgtccatgatatgtgcatgaggctactggagatttggattaatttcgtttttttagac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tatgtccatgatatgtgcatgaggctactggagatttggattaatttcgtttttttagac 408
Query: 425 ctgtatcctaccctggagatgcctcattgcatatgtgcaaacatcccagagtctgaagta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctgtatcctaccctggagatgcctcattgcatatgtgcaaacatcccagagtctgaagta 348
Query: 485 atctgaagccaaaacacatctggctctggacattcggatgcaggatattccatccagatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atctgaagccaaaacacatctggctctggacattcggatgcaggatattccatccagatg 288
Query: 545 ctaatgaatgtctctgtgggagatgctgtttagaagtctgtcccctgcttcacactttaa 604
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 287 ctaatgaatgtctctgcgggagatgctgtttagaagtctgtcccctgcttcacattttaa 228
Query: 605 ttgtgaaatgtgttgactttgtc 627
||||||||||||||||||||||
Sbjct: 227 ctgtgaaatgtgttgactttgtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_b09.g1 MSMg01no436_b09.g1 CHROMAT_FILE:
MSMg01no436_b09.g1 PHD_FILE: MSMg01no436_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:04 2005
(501 letters)
>mm_chr5_37709214_37710116
Length = 903
Score = 926 bits (479), Expect = 0.0
Identities = 497/503 (98%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 1 cccaggatccgaggtcagctgggaatcagccaggaaactcctccgttcttcttcttgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaggatccgaggtcagctgggaatcagccaggaaactcctccgttcttcttcttgggt 260
Query: 61 ctgtgtgagctctgctgctgcctctgcctggcgagcctgagacgcctggaccagatcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtgagctctgctgctgcctctgcctggcgagcctgagacgcctggaccagatcttt 320
Query: 121 gccccgctgcatgaattctgggattgaaaagaaccatagagcggggggcgggggtcactc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccgctgcgtgaattctgggattgaaaagaaccatagagcggggggcgggggtcactc 380
Query: 181 tccagcagggtcagagtgactcgctactgtgacctatcaagtggtcccttctctgtagat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagcagggccagagtgactcgctactgtgacctatcaagtggtcccttctctgtagat 440
Query: 241 gccagatctgtttttctgggtaggtctcactgacagtgatctcaagggt-ttgaactctg 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gccagatctgtttttctgggtaggtctcactgacagtgatctcaagggtcttgaactctg 500
Query: 300 cccagcctatcttggtggccctgtgggcaggagcaggcatggagaacctgtgtagctttc 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagcctatctcggtggccctgtgggcaggagcaggcatggagaacctgtgtagctttc 560
Query: 360 ctccacccatgctgacctgactcacagtcactagctcttcagctgggcggggctagggct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccacccatgctgacctgactcacagtcactagctcttcagctgggcggggctagggct 620
Query: 420 gcaagtgggtagcatggatcacccc-tggacacttctatgtcctctctggttgacagctt 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaagtgggtagcatggatcaccccctggacacttctatgtcctctctggttgacagctt 680
Query: 479 cttctcctttgagttctaggtgg 501
| |||||||||||||||||||||
Sbjct: 681 cctctcctttgagttctaggtgg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space: 438463
Effective search space used: 438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
