Query= MSMg01no436_l03.b1 MSMg01no436_l03.b1 CHROMAT_FILE:
MSMg01no436_l03.b1 PHD_FILE: MSMg01no436_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:50 2005
(603 letters)
>mm_chr5_42199326_42200328
Length = 1003
Score = 1104 bits (571), Expect = 0.0
Identities = 592/599 (98%)
Strand = Plus / Plus
Query: 5 gaattctctttttgccgctagtgaccttcagaggtgatgtatatcaagggctgactcatg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttttggagctagtgaccttcagaggtgatgtatatcaagggctgactcatg 264
Query: 65 atgtgatgtgctgacctattatcatactgagcctgtgactatctctaccatacaaatcac 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgatatgctgacctattatcatactgagcctgtgactatctctaccatacaaatcac 324
Query: 125 atgagattgcagtttgtgccaacactggactgaacccacagtgaggctgctggcaaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgagattgcagtttgtgccaacactggactgaacccacagtgaggctgctggcaaagtt 384
Query: 185 gttgtagttagttaaggtcaaataccaattagctgtatagccaaattactcaatctctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgtagttagttaaggtcaaataccaattagctgtatagccaaattactcaatctctct 444
Query: 245 cagttattcccaaaactacaaatgcaatgtttaatgttcacttgattggattatataaac 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 cagttattcccaaaactacaaatgcaatgcttaatgttcacttgattggattatataaac 504
Query: 305 tacttaagaacatctgtgaaaaggaacagagcatacatagtacatagaagactctcaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttaagaacatctgtgaaaaggaacagagcatacatagtacatagaagactctcaaga 564
Query: 365 aatagtaattatagtaaacattaaagttatgacagtggaactcattaacttaccttcttt 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatagtaattatagtgaacattaaagttatgacagtggaactcattaacttaccttcttt 624
Query: 425 gttttgagatttaaagtgaatttcttcattgattcttgactctgaattttcaacctaaat 484
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 gttttgagattcaaagtgaatttcttcattgattcttgactctgatttttcaacctaaat 684
Query: 485 atacaataaacaagttgtttctcgatagtctcacataaacttaaaggcaggttaaaaagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atacaataaacaagttgtttctcgatagtctcacataaacttaaaggcaggttaaaaagt 744
Query: 545 tatgtgtatacctggctgtttacaacaatgctgtcaggactagggggcatgttctcttc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatgtgtatacctggctgtttacaacaatgctgtcaggactagggggcatgttctcttc 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_l03.g1 MSMg01no436_l03.g1 CHROMAT_FILE:
MSMg01no436_l03.g1 PHD_FILE: MSMg01no436_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:51 2005
(511 letters)
>mm_chr5_42357259_42358167
Length = 909
Score = 930 bits (481), Expect = 0.0
Identities = 503/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 1 taggacaagccaaggtctggctggcgggttggggtgggttaggtgcccaaggagaaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 taggacaagccaaggtctggctggcgggttggggtgggttaggtgcccaaggagaaagat 650
Query: 61 ttatccctctctgctgccatccctggttgtctatctcttgtcttaacctatcatctctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttatccctctctgctgccatccctggttgtctatctcttgtcttaacctatcatctctca 590
Query: 121 ctgaaggagctatagcctctcgctttgccctttccagacaaccctgaagcatgcaataac 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 589 ctgaaggagctatagcctctcgctttgccctttccagacaaccctgaagtgtgcaataac 530
Query: 181 aaagacatgagtgtgaatttccaagcatgatgtgacatgattttcatttttaaaaaattt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaagacatgagtgtgaatttccaagcatgatgtgacatgattttcatttttaaaaaattt 470
Query: 241 tgccatgcttgttctctatgcttttatttttcatgtgtccatataaaaaatacaagagag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 469 ttccatgcttgttctctatgcttttatttttcatgtgtccatataaaaaatacaagacag 410
Query: 301 aggctggatcccattttatctgtattccacggcaactatttcacaagttctctaagatat 360
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aggctggatcccatt--atctgtattccacggcaactatttcacaagttctctaagatat 352
Query: 361 aaagagagtaataaacagaatcacataacttcttccccaggtggttaaacaattctttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaagagagtaataaacagaatcacataacttcttccccaggtggttaaacaattctttca 292
Query: 421 ggtactcagcactgacaagcacagagagatgaagagtagtggaccagtcacactttctac 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 291 ggtactcagcactgacaagcacagagagatgaagagtagtgggccagtcacactttctac 232
Query: 481 aactatgaagaaattccaaggaaaacaactt 511
|||||||||||||||||||||||||||||||
Sbjct: 231 aactatgaagaaattccaaggaaaacaactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 909
Length adjustment: 10
Effective length of query: 501
Effective length of database: 899
Effective search space: 450399
Effective search space used: 450399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
