BAC Information

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BAC

Clone NameMSMg01-439A24
Chromosome5 (Build37)
Map Location 88,367,445 - 88,367,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3
Downstream geneBC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A24.T7 (MSMg01no439_a24.b1)MSMg01-439A24.TJ (MSMg01no439_a24.g1)
ACCAG529509AG529510
length759751
length of high quality
(start - end)		473 (46 - 518)392 (73 - 464)
definitionCHROMAT_FILE: MSMg01no439_a24.b1 PHD_FILE: MSMg01no439_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:04 2005CHROMAT_FILE: MSMg01no439_a24.g1 PHD_FILE: MSMg01no439_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGTAGTTCTTCTGACCCCATGTGTGTGTAATATGCCACTGTT
ATTATACTGGCCATGTCTGCATCTTTGTACGTAAATATAACTCTCCATTA
TAAAAACAAATGATTTCTCTTTCCTTTGAAACCAATGTGGACTATTACAG
ATACACAGCTGGTGAAAATATGGTGAATTAGTTCATAGAGTGCCCAACAT
GAACAGATGCAATTGTCAGGGAACCCTAACTTACCTGTATATCCTCTCTT
CTACTGCAAACTGCTCTGTCCATATCAGGCTTAGGACTATTCAAAGTATT
CAACATGCTTAGATCTCATTGAAGAAGTACAAAGTATTTGAAAGGTCAAG
CCAACATCTTCTTTCTAAAACCTACCAGTCTTGTAGAAATTCTTGCCAAT
GGTAATGATATAGATCCTCTCCAGAGCACAGACTTTAAATGAACAATCAT
CAGCATCATCAAAGACTCAGAGTATTAAATGACACAAAGCATCAGCTTAG
TGAAATTAAGGAGAANAAGCTTAAGAGGAAGGAAACACAGTGATGCCCAG
GAAAACACAAAGATAAAGGTGTTGGACAGAGAACTCCTTAACCCTGATAA
AAAGTTTCAGGAAAGAACTTGGATATAAAATAACTCAAACAAAGCAATGG
CCTTTCCCTACCCAAGGAATAAAAGGGCTGAAAAAAAAATTAAGTAAACA
ACCCCCTTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACAACATCAAGGGCCTCTCCTCCCAT
TGATGGCCAACTAGGCCATTCTCTGTTACATATGCACCTAGAGACATGAG
TCCCACCATGTGTTTTCTTTTATCAGACCAGGAAACCATGAATTGTCTAG
CAAAGTACTTACTGGTTACCAACATCGTCCATTTCTCTAACATTTTCACA
TATGTTCTCTGATCAACTGTAACTTGCTCTTCCATATAATTTTATTTAAT
TCTGTATCATTCAAACAGATGATTTTTATTTTTATAAATTATATTGTTAA
TTTCTTTTTAAGGAATAACAATCAACAGTATAATTTTACTTCACTGATTA
AAAAAACCACCATATATATGTGTGTGTATATATATATATATATATATGTA
TATGTATATGTNTNNNCNNNNTTTNNCNTTTTTCTCCNCCCTTTTTCTTT
TCCTTTTCCCCCTTTCTTTTTTCCTTCCTTCCCTTTTTTCCCCTTCCCCC
CCTCCCTTTTCTCTCTTTCTCCTTTTCTCCCCCCTTTCCCTTTTCCTTTT
TCCCCCTCTTTTTCTCCTTCCCCCTTTTTTCCTCTTTCCCCTCTTTTCTT
TCCTTTTTTCTCCCCTTCCTTTTCTTTCCCCCTTCCTTTTCCTTCTTTTT
TCCCTCCTTTTTTCTCCCCCTCCCTTTCTCCCTCTTTCTTTCTTTTCCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a24.g1 MSMg01no439_a24.g1 CHROMAT_FILE:
MSMg01no439_a24.g1 PHD_FILE: MSMg01no439_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:04 2005
         (392 letters)



>mm_chr5_88367245_88368036
          Length = 792

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaacatcaagggcctctcctcccattgatggccaactaggccattctctgttacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaacatcaagggcctctcctcccattgatggccaactaggccattctctgttacata 260

                                                                       
Query: 61  tgcacctagagacatgagtcccaccatgtgttttcttttatcagaccaggaaaccatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacctagagacatgagtcccaccatgtgttttcttttatcagaccaggaaaccatgaa 320

                                                                       
Query: 121 ttgtctagcaaagtacttactggttaccaacatcgtccatttctctaacattttcacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctagcaaagtacttactggttaccaacatcgtccatttctctaacattttcacata 380

                                                                       
Query: 181 tgttctctgatcaactgtaacttgctcttccatataattttatttaattctgtatcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctctgatcaactgtaacttgctcttccatataattttatttaattctgtatcattc 440

                                                                       
Query: 241 aaacagatgatttttatttttataaattatattgttaatttctttttaaggaataacaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaacagatgatttttatttttataaattatattgttaatttctttttaagaaataacaat 500

                                                                       
Query: 301 caacagtataattttacttcactgattaaaaaaaccaccatatatatgtgtgtgtatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 caacagtataattttacttcactgattaaaaaaaccaccatatatatgtgtgtatatata 560

                                      
Query: 361 tatatatatatatatgtatatgtatat 387
           |||||||| |||||| ||||| |||||
Sbjct: 561 tatatatacatatatatatatatatat 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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