ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCCTACACATTTCATGCTTCACAAATTATCTCTCTTTTTGCAACCCAGAT
TTGAAGCATCTGGAATTTTCTAGCTCTTCAATCTCCATCTTGTTATAATG
GACATAAGTAATTAAGTTTCATTGTTAATATATCTTATATTTCTCAAGAA
GTAGTTGAGCTTTGCCTCTTCTGCATGCCGTGTGGTTGGTTATTAACTCT
TTATTCAATATTACTTGATAACTGAGAGTCTTAAATGGAAAATGTTAGAA
AGCTATACTGTGGCTCCTTTTATAAGATAAAATTATACATTTTTGACATC
TTGGACCTCTTTTATCAGTTTTTAGACTGACTTTTTCCAATTGTCAATGC
CAAAACTATTTCATGATCATATGCTGTCTACACACACACACACAAACACA
TACCTGCCAAAACAATGTTATGTTACAAATGATGATCCCCAGATCCACTG
AGTATAACAACATATGCAAGCTCTTTACCATCTATCCATAAGCTCCCTGA
GTCTAATCATATAAACTAGAGCAACAGTATGCTGAATGTGCAAGGTGATG
TGATGGCTATTCCTGAAAAATGTCCATTTGCAGCATCCAAATACTATGCG
AGAATATTTTTCCAAAAAACTTAAAGAAGTGGTTGGACATTTTACAAACT
TCCCCAAAGCCTGGGGTTTTACAAAAAATATTCAACTTCCCTTTG

ACAGTGGGAGGCCTGGGCGGCGCCTGGTTTCAGAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCCTAAAGCAATTAGAGAACAAAAGGAGAT
GAAGGGATTATAAATTAGAAAGGAAGAAGTCAAAATATCAGTATTTGCAG
ATGATATGATAGTATATGTAAGTGACCCTAAAAATTCCACCAGTGAAATC
CTAAACCTGATAAACAGCTTCAGTGAATTAGCTGGATAGAAAATTTTCTC
AAACAAATCAGTGGCCTTTCTCTACACAATGGATAAACAGGCTGAGAATG
AAATTAGGTATTCTAATTTCCTTCACAATAATCACAAATAATATAAAATT
CTTTGGTATGACTCTAAGGATGTGAAAGATCTGTATGATAAGAACTTCAA
ATCTCTGAAGAAACCCATCGATGAGATTTCTGAATATTGCCCGATCTCCC
ATGCTCATGCACTGCCTAGTATAACCCACTCCCCTTTCTCCCCCTTTCTT
GCCCCTTTGCCCCTATCCTCTTTCCCCCCCTCCCCCTTTTTCCTTTTTTT
TCCCTTTTTTCCCTATCCATTCTTTACGTTCCCTTTTTTTTCTTTTTCCC
CATATTCCTTCCTTTCTCTCCCATCCCCCCCCTATCTCGTATCCTTTCTT
TTTTTCTTTATCCCCCTTTTCCCATCCTCCTCCCCTCCTTTTTTCCTCCC
TTTTTTTCTTCCCTCCATTTTTTTTCCTCTCTCTTCTTTTTTCCCCCTCC
CTCCCTN

Query= MSMg01no439_b13.b1 MSMg01no439_b13.b1 CHROMAT_FILE:
MSMg01no439_b13.b1 PHD_FILE: MSMg01no439_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:07 2005
         (547 letters)



>mm_chr5_69056167_69057113
          Length = 947

 Score =  992 bits (513), Expect = 0.0
 Identities = 534/541 (98%), Gaps = 2/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctacaca-tttcatgcttcacaaattatctctctttttgcaacccagatttgaa 64
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattcctacacagttt-atgcttcacaaattatctctctttttgcaacccagatttgaa 687

                                                                       
Query: 65  gcatctggaattttctagctcttcaatctccatcttgttataatggacataagtaattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcatctggaattttctagctcttcaatctccatcttgttataatggacataagtaattaa 627

                                                                       
Query: 125 gtttcattgttaatatatcttatatttctcaagaagtagttgagctttgcctcttctgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtttcattgttaatatatcttatatttctcaagaagtagttgagctttgcctcttctgca 567

                                                                       
Query: 185 tgccgtgtggttggttattaactctttattcaatattacttgataactgagagtcttaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgccgtgtggttggttattaactctttattcaatattacttgataactgagagtcttaaa 507

                                                                       
Query: 245 tggaaaatgttagaaagctatactgtggctccttttataagataaaattatacatttttg 304
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 506 tggaaaatgttagaaagctatactgtggctccacatataagataaaattatacatttttg 447

                                                                       
Query: 305 acatcttggacctcttttatcagtttttagactgactttttccaattgtcaatgccaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acatcttggacctcttttatcagtttttagactgactttttccaattgtcaatgccaaaa 387

                                                                       
Query: 365 ctatttcatgatcatatgctgtctacacacacacacacaaacacatacctgccaaaacaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctatttcatgatcatatgctgtctacacacacacacacaaacacatacctgccaaaacaa 327

                                                                       
Query: 425 tgttatgttacaaatgatgatccccagatccactgagtataacaacatatgcaagctctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgttatgttacaaatgatgatccccagatccactgagtataacaacatatgcaagctctt 267

                                                                       
Query: 485 taccatctatccataagctccctgagtctaatcatataaactagagcaacagtatgctga 544
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 266 taccatctatccataagctccttgagtctaatcatataaactagagcaacagcatgctga 207

            
Query: 545 a 545
           |
Sbjct: 206 a 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)