Query= MSMg01no439_o19.b1 MSMg01no439_o19.b1 CHROMAT_FILE:
MSMg01no439_o19.b1 PHD_FILE: MSMg01no439_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:10 2005
(529 letters)
>mm_chr5_87978117_87979045
Length = 929
Score = 971 bits (502), Expect = 0.0
Identities = 519/525 (98%)
Strand = Plus / Minus
Query: 5 gaattcccagattatgacaaagtcaatctgttcacacacacagtctcttccagaataagg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattcccagattatgaaaaagtcaatctgttcacacacacagtctcttccagaataagg 670
Query: 65 tactgaggacttagaaagagtaaggaattctcatcttattacagatttcataaggctatc 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 669 tactgaggacttagaaagagtaaggaattctcgtcttattacagatttcataaggctatc 610
Query: 125 atcataatctcaggttgtgtcatagatgactctccccttatcttgggacaagtgagtagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atcataatctcaggttgtgtcatagatgactctccccttatcttgggacaagtgagtagc 550
Query: 185 tgagtgtttagatttaatcattgtgttaaataaaacaacataaccctttataaaaagaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgagtgtttagatttaatcattgtgttaaataaaacaacataaccctttataaaaagaag 490
Query: 245 ctaatctcagtagcatcactagtagctgtctagccttttcccctctcacttttcacagga 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 489 ctaatctcagtagcatcactagtagctgtcaagccttttcccctctcacttttcacagga 430
Query: 305 tggcacttgaagaatttaccccatgattactctggacttcagtgtacaatttttgtgtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tggcacttgaagaatttaccccatgattactctggacttcagtgtacaatttttgtgtag 370
Query: 365 atcaatttgagtgcctggacagttgcttttgtttatatcagaaggaagattgggtcaaat 424
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atcaatttgtgtgtctggacagttgcttttgtttatatcagaaggaagattgggtcaaat 310
Query: 425 atttttctcagtcgtctaagtctgtagttactgttggtagatagaataacaaatacngag 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309 atttttctcagtcgtctaagtctgtagttactgttggtagatagaataacaaatacagag 250
Query: 485 aaataatcccttctcccattctggtagtgtcacaatggatctgaa 529
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaataatcccttctcccattctggtagtgtcacaatggatctgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_o19.g1 MSMg01no439_o19.g1 CHROMAT_FILE:
MSMg01no439_o19.g1 PHD_FILE: MSMg01no439_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:10 2005
(523 letters)
>mm_chr5_87886972_87887894
Length = 923
Score = 600 bits (310), Expect = e-175
Identities = 475/547 (86%), Gaps = 39/547 (7%)
Strand = Plus / Plus
Query: 1 cactctaggcagagcttaaagctagaaaccttgagcctacccccatagtgtttcacccta 60
||||||||||||||||||||||||||||||| |||| ||||| | |||| ||||||| |
Sbjct: 201 cactctaggcagagcttaaagctagaaacctcaagcccacccctacagtggttcacccca 260
Query: 61 tccaacaaggct-acatttactccaaaaaggccataactcataatagttccatcctctgt 119
|||||||||| | ||||||||| ||||||||||||||||| |||||| |||| ||||||
Sbjct: 261 tccaacaagg-tcacatttacttcaaaaaggccataactcccaatagtgccattctctgt 319
Query: 120 gggtcaatcattcaaacacatgagtctatgggggccaaacctattcaaaccaccacagct 179
|||||||||||||||||||||||||||||||| | |||||||| |||||| |||||| |
Sbjct: 320 gggtcaatcattcaaacacatgagtctatgggagacaaacctactcaaactgccacagtt 379
Query: 180 atagaagtcatttcccagctgttagttctttaatccacagataaaataagttacactgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atagaagtcatttcccagctgttagttctttaatccacagataaaataagttacactgat 439
Query: 240 gaatgtgttttgtatcatcagggattttctgcagtctcacttgacttttgataacactca 299
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaatgtggcttgtatcatcagggattttctgcagtctcacttgacttttgataacactca 499
Query: 300 ggcaagggagatgcagaagaaaacagcagaagagggagaaaacttgagtgaaaaggatat 359
||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ggcaagggaaaagcagaagaaaacagcagaagagggagaaaacttgagtgagaaggatat 559
Query: 360 tgagtggc-----ca--a-ag--ta------gtt-tt--------------tcaacccca 388
|||||||| || | || || ||| || |||| ||||
Sbjct: 560 tgagtggctgaagcatcagagaataaaaggggttcttaggctcagtggtgttcaaaccca 619
Query: 389 gtttcct-acacagtggcatggctagttcactacttctcaatgcatgattaccatacttt 447
||||| | ||||||||||||||||||| |||||| |||||||| |||| |||||||||||
Sbjct: 620 gtttc-tcacacagtggcatggctagtccactacatctcaatgtatgactaccatacttt 678
Query: 448 gatctcagctggaaaagaaa--taaagtgaanagaatagg-aagcaatcatgaagtcaac 504
|| || | |||||||| ||| ||||||||| ||||| || |||||||||||||||||||
Sbjct: 679 gaccttaactggaaaaaaaaattaaagtgaaaagaat-ggcaagcaatcatgaagtcaac 737
Query: 505 acaaaaa 511
|||||||
Sbjct: 738 acaaaaa 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
