BAC Information

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BAC

Clone NameMSMg01-440C02
Chromosome5 (Build37)
Map Location 148,528,379 - 148,528,627
singlet/doubletsinglet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440C02.T7 (MSMg01no440_c02.b1)MSMg01-440C02.TJ (MSMg01no440_c02.g1)
ACCAG530319AG530320
length872750
length of high quality
(start - end)
---249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no440_c02.b1 PHD_FILE: MSMg01no440_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:27 2005CHROMAT_FILE: MSMg01no440_c02.g1 PHD_FILE: MSMg01no440_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGATAAGAGTNAGAGANAAAATANAGGAAGTGATGGATATGTCTAAAAT
TTGGGCCCGTAAACGACTCACTATAGTTCAGAGAATCCGCGGATTCAAAT
CCCAGTTTGCACACGGGGGGTTCGCCCTCTTCTGGTGTGTCTGAAGAGAG
CTACAGTGTACTTACNTATAATGATAAATAAATAAATTCTTTTTTTTTAA
AAAAATCTGTCACATCAGGTAGAAAACTTTANAGGAAAAGAAAAAGGAAA
AGAACAGAAAAGGAAAGGGAAAGGAACGGAATGGAACCGGATCGAAATGA
AAAGGAATTTAATCGAAAAGGGGGAAATTTCCCAAAAAAAAAAATGGTTT
TGGTTGGGGCCCCCCTTTAAAAAGGGTGTTTTTGAAACTCAAAAAATTTT
TCCAAAATTTTTCCCGGGGGCTTTTTGTCTCCCCAAAAAAAAAATTTTTT
CCCGGGGGCCCAAAAAAAGGGGGGGAAAAAATTTCTTATTAATCCCCCGT
GTTTTTGTGTCCCTTTAAAAAAAAATTTTTATTTTAAAAGGGGGGGTTCT
CCCCCCCTCCCTCCTTTTTTTATAAAAAAAAAAAAAACTCACTCTTTGAG
AAGCTTCTCTCTTGCAAAACACCTCCCTCCCCCCGCGGGGATGAAAACAC
CCCCCCACCACCCAGCGTGTGACACCCCCCCCCCCTCCCCCTCTCCCAAA
CCGCGTGGTAGAAAAAAAAATTTCTTTTATTCTCCCCCTCGCCCCCCACT
ACATAAACAATAGAATGCTTTTCTCTTTATAATACACATCTTTCCCCCCC
ATTTTTTATAACATATNCCACTTATACTATTATTACAATTATTTCCATCC
CTCCTTTGTTCTGAAAAAAAAA
NNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATGCAGGCCTTCAGACA
CCTTGCAGACACCGTACAATGAACTGAAGGAAAGCTCCTGCCTCTGTGTG
AGAGAGTCCCGGCTGCACCGAGGGAGGAAAGGCCACATGGGAGGGGACCC
CAGTACCAAGTTCTCAGGGAAACTGCTTAGACTGTGTCTGTCCAAGAGAC
TCAGGCGGGAGCTAAAGGAAACCACCAGCAGAGGGCCCAGAAGTCTAACC
TGCAGCACACTGAGGTGTACCCAACTGACTTGTTTCACCAAGTGTGGGGA
CCGCTGGCCATGCTTCCATAGATGGAAGATACAAACAACTATTGGCCTCC
ACCCCGCAGAAACAAGGGGCTGGGCACTCTGTGTCTGAAGATAACGGCAC
CACTCGTGATCACATCGAACACCGATTAGAATCCCCAGTGTTCTCGAGGA
AAGGGGCGCTGCTTGGGATCTGATGTCTAGCAAGGAGAATTCGAGCCTCA
CGTTCCCCCAACGCAGTGGTTTTGGACAATGCAGATCCAACCATCGGGTA
TCAGCATTTTTCTCTACCAGGTCCAGAAGTCAGTCACCCCAGTCAAGGGT
ACTGACCCCAGCCAGGGAGACAGATTCTTGGAGTCTCCACTATAATACAA
ACCATCTGTGAGTCTTCATAGAGCCTTCCGCACATCCCGTTGGTATCCGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_c02.g1 MSMg01no440_c02.g1 CHROMAT_FILE:
MSMg01no440_c02.g1 PHD_FILE: MSMg01no440_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:27 2005
         (249 letters)



>mm_chr5_148528179_148528827
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatgcaggccttcagacaccttgcagacaccgtacaatgaactgaaggaaagctcct 60
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaaatgcgggccttcagacaccttgcagacaccgtacagtgaactgaaggaaagctcct 260

                                                                       
Query: 61  gcctctgtgtgagagagtcccggctgcaccgagggaggaaaggccacatgggaggggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctctgtgtgagagagtcccggctgcaccgagggaggaaaggccacatgggaggggacc 320

                                                                       
Query: 121 ccagtaccaagttctcagggaaactgcttagactgtgtctgtccaagagactcaggcggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtaccaagttctcagggaaactgcttagactgtgtctgtccaagagactcaggcggg 380

                                                                       
Query: 181 agctaaaggaaaccaccagcagagggcccagaagtctaacctgcagcacactgaggtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 agctaaaggaaaccaccagcagagggcccagaagtctaacctgcagcacactgagatgta 440

                    
Query: 241 cccaactga 249
           | |||||||
Sbjct: 441 cgcaactga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)