BAC Information

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BAC

Clone NameMSMg01-440I12
Chromosome5 (Build37)
Map Location 42,669,740 - 42,669,973
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440I12.T7 (MSMg01no440_i12.b1)MSMg01-440I12.TJ (MSMg01no440_i12.g1)
ACCAG530626AG530627
length727745
length of high quality
(start - end)
179 (89 - 267)234 (332 - 565)
definitionCHROMAT_FILE: MSMg01no440_i12.b1 PHD_FILE: MSMg01no440_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:01 2005CHROMAT_FILE: MSMg01no440_i12.g1 PHD_FILE: MSMg01no440_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTGTNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCA
GAGACAGCGCGCGGAATTCTCACCTGATGCCAACCAAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATGCAAATGAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCNTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCATAAAACTGGACATAGTACTACTTTTATTATCAGCAA
TACCTCTCCTGGGCTATATCCAGAAGATATCCCAACCCGGTAAAAGGGAC
ACATGCCCCCACTATGTTCATAGCAGCCTTAATTCAAAATAAGCCAAAAT
GTGGGAAGGAAACCAAAATGCCCCTCAACCAAGGAAATGGAAACCGAAAA
TGGGGGAATTTTTAACCAATGGGAGAACAACCTCCCCTTTTTAAAAAAAA
GGAATTTTTTGAAAATTCCCAACCCCCAATGGGTGGGGCCCCTGGGGGGG
GCCCCCCTCCCTGTAGGGGAGGGAACCCCCTTTTCCTCCAAGAAAACCTC
CCCCCCCTTATTTTGGCTCCCCCCCGGAGAAAATAGGGGGGTTTATTATC
ATCCCCCCACCCTCCCCATGAATATTT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAAATTCAAATGAGAATCAGGAGGGGCAT
ATGGATGGAAAGTTTGAGGTAGGAAGGTGAAAAGAAAAATGGAATTATAT
TATAATCTTAAATAAATATTAAAATGAGAAATATGAATCAAGGACCCAAA
CTTTTTAAGATCTATAGAAGAAACAGTGTAACTAAACAAAGGAGAATGGG
GGTACTCTGAGCATAAAAAGTCAGACCGTGAACGTATATGTCATTATCCC
TACACTCAAGAGGTCTTGTTCATTTCTCTCATAAAGACAGAAAAAGACAT
AAGCTTGAGGAATTGTCATCTTTACAACCCCCTTGTGGGTCGTGATGTGA
CATATCTGCAAGTGTTTTGATTCAGGAATGTGTAAAGCTAATTTTTTAAG
TGAGCAGGCATAGAATTCACAGGAACCTTCCTCTGGATCAGATATTCTCA
CCTAGAAAATCCCACCACAAGGGGATATTTTGTTTTTCTATACTCTTCAG
ATTTTCATTTCAAAAGGCTCCGTCTGTCAGACAAGGGTATCTGGGTTTGT
TTAAAGCAAATCACAGTCCCTTTACATATTAGCCCTTCCATCACATGGTG
TGGAAAAGAGAGGCTTTTTTATACTCAAATTCCCTAAAGGTTTTCAGCAT
TAGATTCTCATCTGAAATCCCCTGATCGGGTTTTTTATGGACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_i12.g1 MSMg01no440_i12.g1 CHROMAT_FILE:
MSMg01no440_i12.g1 PHD_FILE: MSMg01no440_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:01 2005
         (234 letters)



>mm_chr5_42669540_42670173
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagacagaaaaagacataagcttgaggaattgtcatctttacaacccccttgtgggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 taaagacagaaaaagacataagcttgaggaattgtcatctttacaacccccttgtgggtt 260

                                                                       
Query: 61  gtgatgtgacatatctgcaagtgttttgattcaggaatgtgtaaagctaattttttaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatgtgacatatctgcaagtgttttgattcaggaatgtgtaaagctaattttttaagt 320

                                                                       
Query: 121 gagcaggcatagaattcacaggaaccttcctctggatcagatattctcacctagaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaggcatagaattcacaggaaccttcctctggatcagatattctcacctagaaaatc 380

                                                                 
Query: 181 ccaccacaaggggatattttgtttttctatactcttcagattttcatttcaaaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccacaaggggatattttgtttttctatactcttcagattttcatttcaaaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)