BAC Information

Click to search

BAC

Clone NameMSMg01-441D08
Chromosome5 (Build37)
Map Location 131,945,412 - 131,945,734
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441D08.T7 (MSMg01no441_d08.b1)MSMg01-441D08.TJ (MSMg01no441_d08.g1)
ACCAG531144AG531145
length753723
length of high quality
(start - end)
334 (81 - 414)---
definitionCHROMAT_FILE: MSMg01no441_d08.b1 PHD_FILE: MSMg01no441_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:54 2005CHROMAT_FILE: MSMg01no441_d08.g1 PHD_FILE: MSMg01no441_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAGAGGA
TCCGCGGAATTCTTTCCTATCCATAAACCATTCCTTTTATTTTGAATCAC
GCCTCTTGAAAAGTAGATTTTTCTAGACTAAATACAGAACCCTTTTTCAC
ATAGGCAGATTTCTATGCAGACTTTGTTCCAATTGGACAATTAAAAAGGT
CAGTTAATTTTTTTTAAAAAAAGATCTTAGCTAGACATGGCGGAACATGC
CTGTCAGCACAGCACTTGGGAAATGGAGGCAGGAGGATCCAGAGTTCAAG
GCCAACCTCGGGCTACCTGAGACCCTCCCTCCCTGCCCCCCCTCTAAAAA
AACACACCAAAGCAAACAAAAGTCCTTAAAATGGGGGGGGGAATACTATA
GACTTATTCTTTGAGAAGCAGTTCCACTTTGTGTACTTTGAACACAAAGT
GCTCATCCCAGGATATATATCGCTGCTGACCCTGTCGAGTCTCGAGACAA
GAGCTTCTATACAGAGCTCTGACTATTTGACTATGATATTTTGATTATGG
CGCGAAAACTGCACCTTTTCGACCTGATCCCCTCTAGTTTCTGTGTTTAC
GGCGCACTTTGTAACTCTATACCCCCCCTGTTTTCGTTACTTCCCTGTTG
ATCTCACCGTTTTTTTTTTCTCCCTTTTCTTTTTTATTTTGCCGTCCTTT
CCCTCGTTATTTTGTCCCTTTCTCCCACACTCTCTTTGGTGTACGTCGAA
ACT
TTTTCTTTTTGGNNNNNNCTCGAGAAGGCGTAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTAA
GGCTGGGGGAAACAGGGTCACTCCCTTAAGGTGGCCTTGGCTGGCCCCAA
ACCAAAGGGTCTCCGGGCAAAAAAACCCCCCTGGGGGGAAAAAAAAAAGG
GTCGCCTAAAAAGGGGGGGGGACCCGCGGGCCCCCCCAAAGGGGGGAAAC
CTCAAAAAAAAAAAAGGGCCCCCCAGAGCCCCCGGGGAAAAACCCCCAAA
AACAAAACCCCCTGGGTTCTTAAAAAAAAAACCCCCCCTCCCAAAAACCA
AAGGAAATATAATTTCCCCCCCCCCCTTTTACCACACTTTCCTTCTTTTC
CCCTCGCGCGGCGGCCTTTTTTTTTTTTAAAAAAAAAAAGCCCTCGCCCC
CCCAATATTCACGGCCCGGGTGTGTTCTCCTGTTAATCAATATCCCACCT
CCCCGCCTCCTCGTGCCCCCCTCCCTCCCCTCCCTTTACAAACCTAAACC
ACCTCATCCCCAACCCCACTTTTTTTTTCTTTTCTTCCTATCCTACTTAA
TATAAAAATTCTTCCCCCCCCCCCCCCCCCCATTTTTTCCCCCTCCCCCC
CCCCCCCCTTTTCCTCCTCATTTTTCTTTCCCCCCCCCTTTCTTTTCTCT
CCTTCTATCTGGCTTTACACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_d08.b1 MSMg01no441_d08.b1 CHROMAT_FILE:
MSMg01no441_d08.b1 PHD_FILE: MSMg01no441_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:54 2005
         (334 letters)



>mm_chr5_131945386_131946120
          Length = 735

 Score =  540 bits (279), Expect = e-158
 Identities = 315/333 (94%), Gaps = 11/333 (3%)
 Strand = Plus / Minus

                                                                       
Query: 3   ccttttattttgaatcacgcctcttg-aaaagtagatttttctagactaaatacagaacc 61
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 349 ccttttattttgaatcacgcctcttgaaaaagtagatttttctagactaaatacagaacc 290

                                                                       
Query: 62  ctttttcacataggcagatttctatgcagactttgttccaattggacaattaaaaaggtc 121
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 289 ctttttcacataggcagatttctatgcagactttgttccaatcggacaattaaaaaggtc 230

                                                                       
Query: 122 agttaattttttttaaaaaaagatcttagctagacatggcggaacatgcctgtcagcaca 181
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 229 agttaattttttttaaaaaaaggtcttagctagacatggcagaacatgcctgtcagcaca 170

                                                                       
Query: 182 gcacttgggaaatggaggcaggaggatccagagttcaaggccaacctcgggctacctgag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gcacttgggaaatggaggcaggaggatccagagttcaaggccaacctcgggctacctgag 110

                                                                       
Query: 242 accctccctccctgccccccctctaaaaaaacacaccaaagcaaacaaaagtccttaaaa 301
           |||||||||||||| |||||||| ||||||| ||||||||||||||||| |         
Sbjct: 109 accctccctccctggcccccctcaaaaaaaaaacaccaaagcaaacaaatg--------- 59

                                            
Query: 302 tgggggggggaatactatagacttattctttga 334
            ||||||||||||||||||||||||||||||||
Sbjct: 58  -gggggggggaatactatagacttattctttga 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space:   235950
Effective search space used:   235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)