BAC Information

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BAC

Clone NameMSMg01-441G01
Chromosome5 (Build37)
Map Location 4,908,630 - 4,909,116
singlet/doubletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G01.T7 (MSMg01no441_g01.b1)MSMg01-441G01.TJ (MSMg01no441_g01.g1)
ACCAG531273AG531274
length739756
length of high quality
(start - end)
491 (52 - 542)478 (82 - 559)
definitionCHROMAT_FILE: MSMg01no441_g01.b1 PHD_FILE: MSMg01no441_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:08 2005CHROMAT_FILE: MSMg01no441_g01.g1 PHD_FILE: MSMg01no441_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCTCCTTTGCAGGAACTGGGACTCAGCCCCTGACTAAG
ACAAGCTATGCAACTGAGTTTTCTGAATGTGGAGAACGTGTGGTGCAATG
GATAAGCCTCACCCTTGGAAACCACTTCCCTGATTATTATACCTCCCCGA
CTAGGTAAGTATAAAAAAGGACAACTTCTTTTAAAAGCCACTTCATCATT
ATCTTATATTCTAGCCATTGAGAACACACTGTCTTATATTCTGAACCCAC
AGTAAGGTCTTAGGTCTCTTAGCCCTGTGATATCAAATCGGGTAAATGAG
AAATTCATTAGAAATATGTTCTTGAGGCTATAAAATAATTGAAGGCAAAA
ATAACATTCATAAAAGGGCCTTGGGATATATCTATGAGGAAAACATTTGA
AAGTTGTTTTCAGAATGAAGTGGGCTGCTGCAGGCAAGCCATCCCCTGTG
CTGTGAGGTACGGGTACATGTGGCACTGCCACTCACATCACCAACCAGGG
CAGGGTTGGTCTCAGTGCTACAGGACTGCTCTTCTCCACTGTATTTATAT
ATGTAGACACCCAACTGGCTCTTCTTCTAAGAGTGTAAGGAGAGGGTTTT
GGAGAGGTAGCATTTCCTGTAAACCATAATACTTTCCTAAAATAATTTGG
TAAAAGCTAACTTTGGGGGATAAACAATTAAAATTATAG
NTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGAATTAGACATTTA
TTTTCTATTTAATAGTGTAAGAACTCAAAATGGGGGCTGGAAGAAATGGT
TCGGTGGTTAAGAGCACTGACTGCTCTTTAAGAGGTCCTGAGTTCAATTC
CCAGCAACCACATGGTGGCTCACAATCATCTCTAATGGGATTTTATGCCC
TCTTCTGCCACGGGCTGGCTTCAATTGACCCCTCAACCCACAGAAGAATC
AGAGTCCAGCAGTGGGCAGGGAGTTGGTAAAAGTAACAGATGTGAACACA
AGGGAGTGTTGATCTGAATGTAATTTCTCAAAGTGAGCATCAGACTTATA
TATTACAGAAGAAAACAAAGAAGTTAGGTGACACATCAGCCAAGGTACAT
TGAAGTTATTTAACACAAAACAGAGAAATGCATAGAAAAAGACTGGCAGG
TACCAGGCAATGTTTACAACTGAGATAAGATCAGCCCTATCTAAAGTCAG
CTATTCACACAGGAGCCAGGTGAAAGGTCTGATGCAATGCTAGTCTATTA
CTAAACCCACCACCAGGTGTCCCTTAGTAAATACCCAATTATGGTTATTC
CTCTTGGCCTATTGAAAAACAGGCCCTATGGGGAGCTCAGTATTCCTAAA
CCCTTTCCTGAAATATATTATACCTTTAATTTCTTCTATAAACTCCATGT
TGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g01.b1 MSMg01no441_g01.b1 CHROMAT_FILE:
MSMg01no441_g01.b1 PHD_FILE: MSMg01no441_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:08 2005
         (491 letters)



>mm_chr5_4908426_4909316
          Length = 891

 Score =  919 bits (475), Expect = 0.0
 Identities = 484/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctcctttgcaggaactgggactcagcccctgactaagacaagctatgcaact 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctcccctgcaggaactgggactcagcccctgactaagacaagctatgcaact 264

                                                                       
Query: 65  gagttttctgaatgtggagaacgtgtggtgcaatggataagcctcacccttggaaaccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagttttctgaatgtggagaacgtgtggtgcaatggataagcctcacccttggaaaccac 324

                                                                       
Query: 125 ttccctgattattatacctccccgactaggtaagtataaaaaaggacaacttcttttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccctgattattatacctccccgactaggtaagtataaaaaaggacaacttcttttaaa 384

                                                                       
Query: 185 agccacttcatcattatcttatattctagccattgagaacacactgtcttatattctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccacttcatcattatcttatattctagccattgagaacacactgtcttatattctgaa 444

                                                                       
Query: 245 cccacagtaaggtcttaggtctcttagccctgtgatatcaaatcgggtaaatgagaaatt 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccacagtaaggtcttatgtctcttagccctgtgatatcaaatcgggtaaatgagaaatt 504

                                                                       
Query: 305 cattagaaatatgttcttgaggctataaaataattgaaggcaaaaataacattcataaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattagaaatatgttcttgaggctataaaataattgaaggcaaaaataacattcataaaa 564

                                                                       
Query: 365 gggccttgggatatatctatgaggaaaacatttgaaagttgttttcagaatgaagtgggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggccttgggatatatctatgaggaaaacatttgaaagttgttttcagaatgaagtgggc 624

                                                                       
Query: 425 tgctgcaggcaagccatcccctgtgctgtgaggtacgggtacatgtggcactgccactca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctgcaggcaagccatcccctgtgctgtgaggtacgggtacatgtggcactgccactca 684

                  
Query: 485 catcacc 491
           |||||||
Sbjct: 685 catcacc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)