BAC Information

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BAC

Clone NameMSMg01-441H06
Chromosome5 (Build37)
Map Location 137,384,714 - 137,385,101
singlet/doubletsinglet
Overlap geneRabl5
Upstream geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021
Downstream geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441H06.T7 (MSMg01no441_h06.b1)MSMg01-441H06.TJ (MSMg01no441_h06.g1)
ACCAG531331AG531332
length805768
length of high quality
(start - end)
409 (50 - 458)388 (82 - 469)
definitionCHROMAT_FILE: MSMg01no441_h06.b1 PHD_FILE: MSMg01no441_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:14 2005CHROMAT_FILE: MSMg01no441_h06.g1 PHD_FILE: MSMg01no441_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGGGTTCCGCACCTACTGTGCAAGCATGAAGAGCTGAGC
TGGATCCTCCATGGTGTCCATGTTAGTCAGGTGCAGGCTGTATGGGTAAT
GTCAGAGCCAGGGAAGCAGAGACAGGAGGATCCTCGGGCTTGCTAGACAG
GCAGCCTGGCCGAATTGATGAGCTCCAGAGCAAGTAAAAGGACAATCTCA
AAAAACAAGACAAAACAAAACAAAAACAAAAAAAAAGAGGGAGGGCTGGC
AAAATGGATCAGCTGGCAAGGGTCTTTGCCACCTAGTCTGACAACCTAAA
TTCAATCCCTGGGACTCCCATGGTGGAAGAAGGGAACCGACTCCTCTGAC
CTCCATATATACTCCATGCTGTGAATGTGCATGGGCACACACACACACAT
CACACACATACACACATCTCACACACACACACATCACACACATATTCACA
CTTTCATTTAACCCCCCCTATATACACCCTTTTCCACTCACACTCTTCTC
CCTCCCCACATTCATTCCACCCTACACCATACCTATATTTTTATCTTAAA
ACCCCCTTTTTATCCCCTTATTTTATTTTACCCCCCCCTTCTTGCACGTA
TCCTCCCCCCCCGGATCTCGAATCCTCCCGCTTCTCCGCCCCCCCCTTCT
CTATTTTTTCGTCCCTTTCTTTTTGGGTTCTTCTTCTCCTCTCTTCTCTC
CCTGAATGTTTTCCGCATAGTCTACCCCTCTTTCTTTTATTTTTCTGTCT
TATTA
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAATTACCTACATGGTTA
AAGTTCAAATCCTTGGGTCCCAGCTCAGAAGGTTAGCTTAATAATATGAT
CTTCATCTGAGGTTATTGGCTGATGGACCAAACATGAGAACCAATGTACA
TTCATAGGTGACTATATGGTGAAGATATGTTTTTAATCCTAAATTAGGAG
GCTGGGGTAGAGCTGGGTGATAGGATGTTTGCCTAGCATACAGGAATCCC
GGGGTTCAATCCTCTTCATATAAAACGTTCATGGTGGTACATGACTCAGT
TTCAGGGTTTGGAAGGTAGAGAGGCACGATGATTGACAGTTCAAGGCCAC
AGCCCGGGCTACAATAGCAAGTCTGAAGCCGGCCTGGGATACGTGAAACC
TGTCAGAGAAAGAAGTTGCTAATTATGCACAGAAGCAAAGGAGGATTGAG
CCATGTGTGGCGTACGCCCGACTCCTCATCATAACAGAAACTATTGGTTG
CCTCTAGTTTGAGGCCCGTTTGGACCCCCTTNNANNGTNGNGNNTNNCCG
GNNNNNNANNNANNNTTACTTTTTATTTTTTTTTTTTTTCTCTCCTCCCT
CTCCCTCCCATTTCCCCCCTCTTCCCCTCTCCTTTTTTTCCCTTCCCCCC
CTCCCCCTTTTTCTTTTCTCTTTTTCTTCCCCCCCTCTCTTTCCTCTCTT
CTCTCTCCCCCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_h06.g1 MSMg01no441_h06.g1 CHROMAT_FILE:
MSMg01no441_h06.g1 PHD_FILE: MSMg01no441_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:14 2005
         (388 letters)



>mm_chr5_137384514_137385301
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattacctacatggttaaagttcaaatccttgggtcccagctcagaaggttagcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattacctacatggttaaagttcaaatccttgggtcccagctcagaaggttagcttaa 260

                                                                       
Query: 61  taatatgatcttcatctgaggttattggctgatggaccaaacatgagaaccaatgtacat 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtgatcttcatctgaggttattggctgatggaccaaacatgagaaccaatgtacat 320

                                                                       
Query: 121 tcataggtgactatatggtgaagatatgtttttaatcctaaattaggaggctggggtaga 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tcataggtgactatatggtgaagatatgtttttaatcctaagttaggaggctggggtaga 380

                                                                       
Query: 181 gctgggtgataggatgtttgcctagcatacaggaatcccggggttcaatcctcttcatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgggtgataggatgtttgcctagcatacaggaatcccggggttcaatcctcttcatat 440

                                                                       
Query: 241 aaaacgttcatggtggtacatgactcagtttcagggtttggaaggtagagaggcacgatg 300
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacattcatggtggtacatgcctcagtttcagggtttggaaggtagagaggcacgatg 500

                                                                       
Query: 301 attgacagttcaaggccacagcccgggctacaatagcaagtctgaagccggcctgggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgacagttcaaggccacagcccgggctacaatagcaagtctgaagccggcctgggata 560

                                       
Query: 361 cgtgaaacctgtcagagaaagaagttgc 388
           ||||||||||||||||||||||||||||
Sbjct: 561 cgtgaaacctgtcagagaaagaagttgc 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)