BAC Information

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BAC

Clone NameMSMg01-441M07
Chromosome5 (Build37)
Map Location 69,837,595 - 69,838,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441M07.T7 (MSMg01no441_m07.b1)MSMg01-441M07.TJ (MSMg01no441_m07.g1)
ACCAG531573AG531574
length768758
length of high quality
(start - end)
445 (71 - 515)493 (77 - 569)
definitionCHROMAT_FILE: MSMg01no441_m07.b1 PHD_FILE: MSMg01no441_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:40 2005CHROMAT_FILE: MSMg01no441_m07.g1 PHD_FILE: MSMg01no441_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGAGTGACAAATCACAGACAATTACATTTGTTCTTCATTC
ATTCTCTTTGGATTTCATTTGTCATGTTACAAGTGCCTCTGTCTTCTTCG
TGTACTTGTTGTCAGATCATTCTGAAAGAAAGGTAAAATTCCCTATGAAA
ATCCACGCTGTCCAGGTATTGATATGGCACATGAGAACACAACAGAAGTC
CTGCCTCACTCTGGAATGCCAACAGTCTCTGGAGTTTCCTTCAGAACAGC
CCAATGACAGCCAGGAGCTGAATATGACTGCCCTCTGTAGACACTGTATG
CACGTGGTGCATGGCATACAGTTGCAGACATTTATACACAGAAAGTAAAA
ATAAATAAATGATTTTAAAAAGAAAGGTGGGGCTGGAGAGAAGGTTCAGC
ATCTAAGAGAACTGAACTGCTCTCCCAGAGAACTCAGGTTCAACTCCTAG
CACCCATAAGGCAGCTCACAACTGTCTGTAACTCCAAGGTCTCACATCCT
CCGCAGATACACATGCAGGCAAAACACTAGTGCAGAAAAAAAGGAGGGGC
CACAGGGATGGGGGGTTAAGGAAAAGAACAATAAACTCTCAATTGGTGGA
CCGTGGTAATAAGCTTANAGTTTAAGGCTCTTTAAAACCATCTCCCCGGG
GGGGGGAAAAAAAAAAAAAAAAATTTTTTTTTTTCTATTTTAGCAAAATT
TTTTTCAACCCTGCCCTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATGTGCGCACAGCTGCTGGTGG
GAATGTAAAGTAGTAGGTGAAGCTAACTCTAGAGAAACAAAACTAGAGTT
TCTACATGACCCAGAGTCCCACTCCTAGAGATAGAGCATAAAAGAAACGC
ATGCATAATGGCGTGAAAACTTGTACATGGATGCTTATGTCTGCATTCCT
CACCAGAATAAAAGGGTAGAAATTATCTTAGTTTCTATCAGCTGTTAAAC
AGGTAAGTAAAGTGTGGCATGTTTATCCTATGGTATAATTATTCAGCAGT
AAAAAAGCAATGAAGTACCTATGCATACTACATTGCCAATGAGCCTAGGA
AACATTATGCTAAGAAATAGAATCAGTCACAGAAGGAAATGTCCTATTTA
TGTGAATTGTCCTTAATATGTATATCATTGAGGCAGAAAGTAAAAAGAAA
AATTTTCTAGTGTTAGGATGGGTAGAAGGCTATTACTTAATCACTGATAT
GTTAAAGGTTAATTTGGATAGTAATAACTGTTATAACTTGATTGAACTGA
TAACTGTATGGGTTTGTGAATATACAGACCACAGAATTGGACACTTTAAA
AGAAGAAATTCTGTGACTTGTGAACTAAATCCTAACTAGGGGAAATTTAA
ACATTGCCTAAAAAGAAACAAAAGGGGAAAGGGGGTCCTTGGACCATATA
TTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_m07.b1 MSMg01no441_m07.b1 CHROMAT_FILE:
MSMg01no441_m07.b1 PHD_FILE: MSMg01no441_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:40 2005
         (445 letters)



>mm_chr5_69837395_69838239
          Length = 845

 Score =  806 bits (417), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacagacaattacatttgttcttcattcattctctttggatttcatttgtcatgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacagacaattacatttgttcttcattcattctctttggatttcatttgtcatgttac 260

                                                                       
Query: 61  aagtgcctctgtcttcttcgtgtacttgttgtcagatcattctgaaagaaaggtaaaatt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgcctctgtcttcttcgtgcacttgttgtcagatcattctgaaagaaaggtaaaatt 320

                                                                       
Query: 121 ccctatgaaaatccacgctgtccaggtattgatatggcacatgagaacacaacagaagtc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctatgaaaatccaggctgtccaggtattgatatggcacatgagaacacaacagaagtc 380

                                                                       
Query: 181 ctgcctcactctggaatgccaacagtctctggagtttccttcagaacagcccaatgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 381 ctgcctcactctggaatgccaacagtctctggagtttccttcagaactgcccgatgacag 440

                                                                       
Query: 241 ccaggagctgaatatgactgccctctgtagacactgtatgcacgtggtgcatggcataca 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggagctgaaggtgactgccctctgtagacactgtatgcacgtggtgcatggcataca 500

                                                                       
Query: 301 gttgcagacatttatacacagaaagtaaaaataaataaatgattttaaaaagaaaggtgg 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgcagacatttatacacagaaagtaaaaataaataaatgattttaaaaagaaaggtgg 560

                                                                       
Query: 361 ggctggagagaaggttcagcatctaagagaactgaactgctctcccagagaactcaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctggagagaaggttcagcatctaagagaactgaactgctctcccagagaactcaggtt 620

                                    
Query: 421 caactcctagcacccataaggcagc 445
           |||||||||||||||||||||||||
Sbjct: 621 caactcctagcacccataaggcagc 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)