MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-442M01
Chromosome	5 (Build37)
Map Location	101,221,873 - 101,222,115
singlet/doublet	singlet
Overlap gene	Hel308
Upstream gene	LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse
Downstream gene	Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040738 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC666364 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666364
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100040763 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040774 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Hnrpd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11991 MGI:101947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	4930524J08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75129 MGI:1922379
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Hnrpdl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50926 MGI:1355299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Enoph1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67870 MGI:1915120
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC062109 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231503 MGI:3041258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666417 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Sec31a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69162 MGI:1916412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 139 ESTs, 3 Proteins

name	LOC100041797 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041797
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Lin54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231506 MGI:2140902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cops4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26891 MGI:1349414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plac8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231507 MGI:2445289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Coq2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71883 MGI:1919133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hpse (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15442 MGI:1343124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hel308 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:191578 MGI:2176740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrps18c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68735 MGI:1915985
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc98 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70681 MGI:1917931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230097K15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231510 MGI:3603816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041888 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040902 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040902
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Cycs-ps2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13065 MGI:109499
definition	note : cytochrome c, pseudogene 2 pseudo : _no_value

name	LOC100040920 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nkx6-1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18096 MGI:1206039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cds1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74596 MGI:1921846
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040763 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254017 GeneID:100040763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040763 transcript_id : XM_001475202.1

name	LOC100040774 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254019 GeneID:100040774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to vesicle-associated membrane protein 8 transcript_id : XM_001475224.1

name	Hnrpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256515 GeneID:11991 MGI:101947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein D transcript_id : NM_001077267.1

name	Hnrpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256517 GeneID:11991 MGI:101947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein D transcript_id : NM_001077266.1

name	Hnrpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256513 GeneID:11991 MGI:101947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein D transcript_id : NM_007516.2

name	Hnrpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256511 GeneID:11991 MGI:101947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein D transcript_id : NM_001077265.1

name	4930524J08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254021 GeneID:75129 MGI:1922379
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 4930524J08 gene transcript_id : XM_001475241.1

name	Hnrpdl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892859 GeneID:50926 MGI:1355299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein D-like transcript_id : NM_016690.3

name	Enoph1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802985 GeneID:67870 MGI:1915120
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enolase-phosphatase 1 transcript_id : NM_026421.2

name	BC062109 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33469052 GeneID:231503 MGI:3041258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC062109 transcript_id : NM_182841.1

name	Sec31a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254025 GeneID:69162 MGI:1916412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 139 ESTs, 3 Proteins product : SEC31 homolog A (S. cerevisiae) transcript_id : XM_132230.8

name	LOC100041797 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254126 GeneID:100041797
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041797 transcript_id : XM_001477560.1

name	Lin54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347334 GeneID:231506 MGI:2140902
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lin-54 homolog (C. elegans) transcript_id : NM_172714.2

name	Cops4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753489 GeneID:26891 MGI:1349414
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana) transcript_id : NM_012001.1

name	Plac8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372376 GeneID:231507 MGI:2445289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : placenta-specific 8 transcript_id : NM_139198.2

name	Coq2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62858752 GeneID:71883 MGI:1919133
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coenzyme Q2 homolog, prenyltransferase (yeast) transcript_id : NM_027978.1

name	Hpse (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353962 GeneID:15442 MGI:1343124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heparanase transcript_id : NM_152803.4

name	Hel308 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487402 GeneID:191578 MGI:2176740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : helicase, mus308-like (Drosophila) transcript_id : NM_001081107.1

name	Mrps18c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037128 GeneID:68735 MGI:1915985
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S18C transcript_id : NM_026826.1

name	Ccdc98 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382638 GeneID:70681 MGI:1917931
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 98 transcript_id : NM_172405.2

name	A230097K15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553636 GeneID:231510 MGI:3603816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A230097K15 gene transcript_id : NM_172715.3

name	LOC100041888 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254128 GeneID:100041888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041888 transcript_id : XM_001477724.1

name	LOC100040902 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254037 GeneID:100040902
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040902 transcript_id : XM_001475461.1

name	Nkx6-1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130385 GeneID:18096 MGI:1206039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NK6 transcription factor related, locus 1 (Drosophila) transcript_id : NM_144955.2

name	Cds1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328392 GeneID:74596 MGI:1921846
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CDP-diacylglycerol synthase 1 transcript_id : NM_173370.3

name	LOC100040763 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254018 GeneID:100040763
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475252.1

name	LOC100040774 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254020 GeneID:100040774
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475274.1

name	Hnrpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256516 GeneID:11991 MGI:101947
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0043488 - regulation of mRNA stability [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform d is encoded by transcript variant 4; AU-rich element RNA-binding protein 1 product : heterogeneous nuclear ribonucleoprotein D isoform d protein_id : NP_001070735.1

name	Hnrpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256518 GeneID:11991 MGI:101947
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0043488 - regulation of mRNA stability [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; AU-rich element RNA-binding protein 1 product : heterogeneous nuclear ribonucleoprotein D isoform b protein_id : NP_001070734.1

name	Hnrpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256514 GeneID:11991 MGI:101947
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0043488 - regulation of mRNA stability [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3; AU-rich element RNA-binding protein 1 product : heterogeneous nuclear ribonucleoprotein D isoform c protein_id : NP_031542.2

name	Hnrpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256512 GeneID:11991 MGI:101947
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0043488 - regulation of mRNA stability [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; AU-rich element RNA-binding protein 1 product : heterogeneous nuclear ribonucleoprotein D isoform a protein_id : NP_001070733.1

name	4930524J08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254022 GeneID:75129 MGI:1922379
definition	codon_start : 1 product : hypothetical protein LOC75129 protein_id : XP_001475291.1

name	Hnrpdl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710036 CCDS:CCDS19460.1 GeneID:50926 MGI:1355299
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA] GO_process : GO:0016071 - mRNA metabolism [Evidence ISS] codon_start : 1 product : heterogeneous nuclear ribonucleoprotein D-like protein_id : NP_057899.1

name	Enoph1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312750 GeneID:67870 MGI:1915120
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : E-1 enzyme protein_id : NP_080697.1

name	BC062109 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469053 CCDS:CCDS19461.1 GeneID:231503 MGI:3041258
definition	codon_start : 1 product : hypothetical protein LOC231503 protein_id : NP_878261.1

name	Sec31a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254026 GeneID:69162 MGI:1916412
definition	codon_start : 1 product : SEC31-like 1 protein_id : XP_132230.8

name	LOC100041797 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254127 GeneID:100041797
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477610.1

name	Lin54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370036 CCDS:CCDS19462.1 GeneID:231506 MGI:2140902
definition	codon_start : 1 product : lin-54 homolog protein_id : NP_766302.1

name	Cops4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753490 CCDS:CCDS19463.1 GeneID:26891 MGI:1349414
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0008180 - signalosome complex [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : COP9 complex S4; COP9 (constitutive photomorphogenic), subunit 4 product : COP9 signalosome subunit 4 protein_id : NP_036131.1

name	Plac8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21105853 CCDS:CCDS19464.1 GeneID:231507 MGI:2445289
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : onzin product : placenta-specific 8 protein_id : NP_631937.1

name	Coq2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62858753 CCDS:CCDS19465.1 GeneID:71883 MGI:1919133
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0004659 - prenyltransferase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0008299 - isoprenoid biosynthesis [Evidence IEA]; GO:0006744 - ubiquinone biosynthesis [Evidence IEA] [Evidence ISS] codon_start : 1 exception : mismatches in translation product : para-hydroxybenzoate-polyprenyltransferase, mitochondrial protein_id : NP_082254.1

name	Hpse (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779887 CCDS:CCDS19466.1 GeneID:15442 MGI:1343124
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence TAS]; GO:0005764 - lysosome [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030305 - heparanase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] codon_start : 1 note : endoglycosidase heparanase product : heparanase protein_id : NP_690016.1

name	Hel308 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487403 GeneID:191578 MGI:2176740
definition	GO_component : GO:0017117 - single-stranded DNA-dependent ATP-dependent DNA helicase complex [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence ISS] GO_process : GO:0006259 - DNA metabolism [Evidence ISS] codon_start : 1 note : DNA helicase Hel308 product : helicase, mus308-like protein_id : NP_001074576.1

name	Mrps18c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037129 CCDS:CCDS19468.1 GeneID:68735 MGI:1915985
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : mitochondrial ribosomal protein S18C protein_id : NP_081102.1

name	Ccdc98 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369523 CCDS:CCDS19469.1 GeneID:70681 MGI:1917931
definition	codon_start : 1 product : coiled-coil domain containing 98 protein_id : NP_765993.1

name	A230097K15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370046 CCDS:CCDS19470.1 GeneID:231510 MGI:3603816
definition	GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC231510 protein_id : NP_766303.1

name	LOC100041888 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254129 GeneID:100041888
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477774.1

name	LOC100040902 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254038 GeneID:100040902
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475511.1

name	Nkx6-1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450629 CCDS:CCDS19471.1 GeneID:18096 MGI:1206039
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IGI] [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0031018 - endocrine pancreas development [Evidence IMP] [Evidence IGI]; GO:0045686 - negative regulation of glial cell differentiation [Evidence IGI]; GO:0045687 - positive regulation of glial cell differentiation [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : Drosophila NK transcription factor related, gene family 6, locus 1 product : homeodomain transcription factor Nkx6.1 protein_id : NP_659204.1

name	Cds1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33186923 CCDS:CCDS19472.1 GeneID:74596 MGI:1921846
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016024 - CDP-diacylglycerol biosynthesis [Evidence ISS]; GO:0008654 - phospholipid biosynthesis [Evidence IEA] codon_start : 1 note : phosphatidate cytidylyltransferase product : CDP-diacylglycerol synthase 1 protein_id : NP_775546.2

name	LOC100040738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040738
definition	number : 1 pseudo : _no_value

name	LOC100040738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040738
definition	number : 2 pseudo : _no_value

name	LOC100040738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040738
definition	number : 3 pseudo : _no_value

name	LOC666364 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666364
definition	number : 1 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 7 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 6 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 5 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 4 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 3 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 2 pseudo : _no_value

name	LOC666417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666417
definition	number : 1 pseudo : _no_value

name	LOC100040920 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040920
definition	number : 1 pseudo : _no_value

clone name	MSMg01-106H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167K11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-053I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-442M01.T7 (MSMg01no442_m01.b1)	MSMg01-442M01.TJ (MSMg01no442_m01.g1)
ACC	AG532322	AG532323
length	890	795
length of high quality (start - end)	---	243 (81 - 323)
definition	CHROMAT_FILE: MSMg01no442_m01.b1 PHD_FILE: MSMg01no442_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:04 2005	CHROMAT_FILE: MSMg01no442_m01.g1 PHD_FILE: MSMg01no442_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTCTCTCTTTTACTCGCCGCTAGCTCGAGTTAGTATTCGCAGAGGATCCG CGGAATTCTTTGTTTTCCATTTCCTATAAGTCATCCTTATTTGGAAGCTA TTATTATGGAACTAGTAATTAGAGGGGCCGGGATTATGCTACCTTAGTTT TTCATGTTTTGGGTGGTCTTACCTTACAATTCGTGATTCTGCAGCCAACA TTTGTTTGCTTTTTCTACTCGCTTTATTTTTCTTTGGCTACGTCTTCCCC GCTAATTACGCCTGACCTGCCCCTTTTTTCTTATTTTCCCTCTTCCCTCC CCTTTTCTCTTTTCCTCTTCATCATTCTCTTCCTTCCCACCTCCCCCCTC TTTCACATTCATTATCTATTTCCTTTTTTCTCCTTTTTCTTCAATTTCTT TCCTCATCCTTTCTCTACCCCTTTTCCCCTTTTTCCCCCCCTATTTCTTT TCTTTTTTCCCCTTTTCTTCCCCCTCTTCTTCTTTCTCCCTTTTTTCCCC CCTTTTTCTCCCCTACTCCCCTCTACTTACACTCCCTTTCTCCCATCCTT CTCCCCCTAATTTCTTTTTCTCTTTTTCATTTTTTTCTCCTATTCTCTCC TCTCCTTCCTCTTCCATCTTCTCCCCCCTTCTTCTCCACCACACCGCCTC CCCCTCTTGTCCCACCCTCTTTCTCCCCTCTCTCCTTCTCCTCTCACTCA TCTCCTCTCACTTCCTTATAACTTAACTATCCTATCAACCTCTCCATGTT AAGAGCTCTCCCATTTATCTTCTTTGCTACCACTATCCATACAATTTCTT TCCTCATTGTACTCTCCATTACTGATTCCCTTTTTTAAATCTTTCCCTGT TCCCCCTCTTCTCCTTCTTATTATTCCTTAAATGTTATCG	TTCGAATGCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAAAATGCAAGAGATT ATTTTCCCTTCTATGCTCTCAGGATTTTTTCCTGGGAGGAAATCCAGTAT CTCGACGTGGCAATCTTCTCATGAGGAGAGATGTGATTCCTACAAATGGT CAATGCCCAAAGCCCAGAATGTGCACAGCCAGCAAGTCTGAGCTCAGACC TTGTCAACAGGTGGGCAGCTGGCTCACCCTTACAGTAGTTGCAGGTGTCA GATTCCAGCAGGGCAGATAAACAAATTTACAAAAAAAGGCAGATAAATTT TTTTTTTTTTAAAGAGGGGTCTGGTGGCTCATGCCTGTGATCCTAGCACC TGAGTAGCGGAGACAGAGATCAAAGTTCAAGTTCACCCCCTATTACCTAG CTAGACTGTGTTTCATGATGTCCTGCATCAATTACCATTGGTAGTTTATC AAGCATTTATCTCTGTTCGTGCTTGTTTTCTATCTTCCGCGTCGTTTGCT TATCTTGCACGTTTTCTCATTTTTCCCATTTTTTCTGTCCTCTTTCCTCT TTATTTTCTTCTTTTTGTCCCTTCATCTTCCCACTCTCTCATCTCTCTTT CTATTCCCCACCCGTCTCTCTAACTTTTCCTCCCCCTCTACTTTCCTCTC TTCCCCATACCACTCCCAATTCTATCTTCCCCTCTTCTATCCCTCCTCTT TCTTTTTCTCTTTCTGTCTTTCTTTCCCCCATTTTCTCCCTCTTT
quality values	Open. Hide. 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 9 9 9 9 9 9 10 8 8 8 8 8 10 15 8 8 8 8 9 9 10 9 9 9 12 13 19 23 24 24 20 15 15 18 16 19 13 13 13 12 17 17 28 28 20 22 11 11 12 15 11 11 11 11 11 13 18 20 23 26 28 21 19 11 11 11 13 13 14 30 22 23 18 15 11 11 11 13 15 28 28 36 32 19 19 19 19 19 17 19 19 25 14 13 9 9 9 9 12 13 13 12 12 18 13 14 15 15 14 14 18 21 22 32 19 20 14 14 13 21 27 32 35 39 37 31 28 15 15 12 15 12 13 20 20 15 11 11 11 10 15 18 19 24 8 8 10 8 8 8 8 8 14 16 23 24 24 15 14 13 15 13 10 10 11 12 12 12 12 12 13 13 28 18 13 10 9 8 8 8 8 8 8 8 8 8 15 11 12 12 11 12 12 12 12 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 19 24 16 17 11 10 10 8 8 8 10 10 10 8 8 8 8 8 8 10 16 17 19 15 15 15 15 17 12 11 10 8 8 8 8 9 10 9 9 10 10 10 10 10 10 10 10 12 9 8 8 6 6 8 6 7 6 8 8 9 9 10 10 8 8 8 8 10 10 9 9 8 12 13 16 10 16 10 10 10 10 8 8 8 8 8 13 13 14 10 10 9 11 11 11 11 10 10 10 8 8 8 9 9 9 12 14 12 12 12 11 8 8 8 8 8 8 8 16 10 12 12 8 8 8 9 9 9 9 10 10 10 10 8 8 8 8 8 8 8 8 9 13 10 8 8 8 10 10 8 8 8 8 8 10 10 10 9 9 9 8 8 8 8 8 8 8 8 13 9 9 9 9 10 15 10 8 8 8 8 10 8 8 10 10 10 8 8 8 8 8 10 10 13 10 13 13 12 13 10 9 10 9 8 8 8 9 13 13 10 10 8 7 6 6 8 8 15 12 14 12 15 10 9 9 9 12 12 10 8 8 8 8 8 9 9 8 8 8 9 8 10 15 15 22 13 11 10 13 10 12 10 16 18 12 12 10 11 10 10 10 16 10 12 12 11 15 13 9 9 9 8 9 10 10 10 10 13 17 18 17 15 10 8 8 8 8 8 8 8 8 8 8 10 13 8 8 8 8 8 10 8 8 8 8 8 8 9 9 9 15 8 8 6 6 8 8 10 8 8 6 6 8 8 6 7 10 10 8 10 10 9 8 8 11 11 14 12 10 21 12 12 10 10 10 15 19 16 13 15 14 14 14 21 15 20 15 23 12 16 15 10 9 9 8 8 10 10 10 8 8 8 10 10 8 7 7 8 8 8 10 10 13 13 10 8 8 7 7 8 8 6 8 8 12 9 9 13 12 19 10 15 10 10 10 15 16 10 8 6 6 6 10 6 6 8 8 8 8 9 10 12 12 10 11 12 12 12 10 10 8 8 8 8 8 8 8 8 7 13 9 9 8 8 8 9 9 16 12 7 11 6 6 8 8 8 10 8 8 11 11 11 10 10 9 10 8 8 8 8 8 8 6 6 10 10 8 8 9 10 8 8 8 10 9 9 9 9 9 13 11 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 11 9 8 8 8 8 8 8 8 8 6 6 8 6 6 8 8 10 13 10 10 10 8 8 10 8 8 8 8 8 8 11 11 9 10 10 12 9 15 12 11 11 12 8 8 7 7 10 8 8 9 9 9 9 11 11 11 10 10 10 8 8 8 8 6 6 8 8 6 6 6 8 8 6 6 8 8 8 8 8 7 7 8 9 9 9 11 10 11 11 9 10 9 10 9 8 8 6 6 8 8 9 9 8 8 8 8 6 6 10 8 10 8 11 8 8 8 8 8 8 10 14 10 8 8 8 8 10 12 10 8 8 8 8 8 6 6 8 8 7 7 8 8 8 8 7 7	Open. Hide. 6 6 6 6 6 6 10 8 10 10 11 12 17 27 21 23 11 16 13 19 19 31 39 43 32 28 26 26 28 28 30 23 23 15 15 16 8 8 7 8 8 10 14 17 20 22 30 25 34 34 37 50 47 36 36 36 33 33 33 47 47 43 25 23 12 8 8 8 13 15 20 30 43 46 33 33 33 33 36 33 42 42 47 59 59 59 42 42 37 37 36 36 42 48 57 50 51 50 50 47 51 68 68 54 59 59 59 59 57 54 68 68 54 57 54 68 57 57 57 57 57 57 57 68 57 57 57 59 59 59 57 57 57 57 57 68 68 68 68 68 57 57 47 47 47 48 57 57 57 57 57 57 57 57 57 57 50 57 57 54 47 47 57 57 57 57 57 57 57 54 54 57 57 68 68 68 68 68 51 50 50 50 50 50 68 50 50 52 52 52 44 43 35 35 44 44 57 57 57 57 52 52 52 57 52 52 52 52 52 59 59 43 37 37 43 37 50 50 57 57 57 52 52 52 52 57 47 47 35 35 43 44 44 57 59 59 44 44 50 57 57 54 54 57 59 50 44 42 42 42 46 59 59 43 43 43 37 43 42 42 42 59 57 57 47 47 47 47 47 47 47 41 39 59 44 42 47 47 47 48 44 46 54 54 57 57 57 57 48 48 43 48 43 48 59 47 47 43 43 43 43 57 57 57 57 57 57 48 48 48 43 43 37 37 37 43 47 59 32 32 15 15 12 11 12 10 13 10 10 11 11 18 28 34 41 41 43 47 43 48 48 48 48 57 48 48 48 43 57 43 48 48 59 59 48 48 48 48 43 43 43 43 43 43 39 34 32 23 23 23 37 28 28 21 12 12 12 12 12 28 28 32 32 20 15 21 13 13 13 23 23 17 15 15 22 15 15 14 21 24 31 31 28 28 22 22 12 11 11 17 17 19 16 14 12 12 14 14 12 22 12 12 12 11 11 10 10 10 13 13 15 26 19 14 13 13 17 21 19 10 10 10 13 17 21 13 13 15 13 13 14 14 16 18 28 26 21 11 10 10 10 10 8 8 8 8 8 8 8 11 13 16 14 14 10 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 11 11 11 12 12 10 10 10 10 12 16 11 11 10 10 10 12 11 10 9 10 8 8 8 8 8 8 8 9 9 10 10 12 15 21 19 10 9 8 8 9 9 10 13 10 8 8 8 8 8 8 8 8 9 9 9 8 8 8 8 8 10 8 10 10 13 13 9 9 10 12 11 12 12 15 13 12 10 12 12 12 9 9 10 10 8 9 9 10 12 10 10 8 8 8 8 8 8 8 8 9 9 16 15 11 11 11 11 11 11 12 10 10 9 8 10 10 14 14 14 13 11 10 10 10 15 12 10 10 10 10 11 11 11 11 12 12 13 15 15 15 9 9 8 8 8 12 8 8 8 8 8 8 8 8 8 8 10 13 8 8 8 8 8 10 10 10 11 12 11 8 8 8 8 8 8 8 8 8 8 8 12 8 9 10 10 10 10 10 8 8 8 8 8 8 11 10 10 8 8 8 8 8 10 16 11 8 8 8 13 8 8 9 9 8 8 8 8 8 8 8 9 9 10 13 10 8 8 8 8 10 12 10 10 12 9 9 13 13 17 14 13 9 10 10 11 11 10 10 11 13 10 10 13 8 6 6 6 8 8 9 13 10 13 13 22 17 17 12 10 12 19 17 11 6 6 6 8 11 12 9 8 8 12 19 22 22 23 12 9 9 7 8 8 8 8 8 10 8 6 6 7 7 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no442_m01.g1 MSMg01no442_m01.g1 CHROMAT_FILE:
MSMg01no442_m01.g1 PHD_FILE: MSMg01no442_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:04 2005
         (243 letters)



>mm_chr5_101221673_101222315
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaaaatgcaagagattattttcccttctatgctctcagga-ttttttcctgggagg 59
           |||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct: 201 aaagaaaaatgcgagagattattttcccgtctatgctctcaggactttttt-ctgggagg 259

                                                                       
Query: 60  aaatccagtatctcgacgtggcaatcttctcatgaggagagatgtgattcctacaaatgg 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatccagtatctcgacatggcaatcttctcatgaggagagatgtgattcctacaaatgg 319

                                                                       
Query: 120 tcaatgcccaaagcccagaatgtgcacagccagcaagtctgagctcagaccttgtcaaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaatgcccaaagcccagaatgtgcacagccagcaagtctgagctcagaccttgtcaaca 379

                                                                       
Query: 180 ggtgggcagctggctcacccttacagtagttgcaggtgtcagattccagcagggcagata 239
           ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct: 380 ggtgggcagctggctcacccttacagtagttgcagatgtcagattccatcaaggcagata 439

               
Query: 240 aaca 243
           ||||
Sbjct: 440 aaca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information