TTTAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAATGTTCCCCAGACTGGCCTCACACTCAGAGATCTG
CCTCCTGATTGCTGGAATTAAAGACATGCACCACATAATTAAGTTTTTTA
GTTAGCACGCAAAAGTTCCAGGACAGCAAGGGCTACACAGAGAAACCCTG
CCTTGAAAAAAAGTTTCATTACCGCCTATCACTTGTTCCTGTTATTGTTC
CTGTTGCTCATGTCTGCCCACAACTACCCTCCAAGCCAACCTCTTTCGTT
TCTCCTCCTCCTCCTCCTCTGGATTCATCTCTAAACAGTCCCCTCTTTTC
ACCGGGAGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGTAGAGG
CAGGTGGATTTCTGAGTTCCAGCCCAGTCTAGTCTACCAAGTGAGTTCCA
GGATAGTCTAAAAGAGTTCTCTTGCCGCAGACTCTCTGGGTTCCTGTGTC
TGCTTGTAACAATGCCCCCTCTATCTTTTTGTCAAATCCTTTTTTGACCT
CCCACTAATATCTCACCCTTATTTTCCTTTATTCCCGTCCTATTTTTCTC
TCTATCTAATTAACCCCCGTTCCTTCCACCATCCCTCTCTCTTTCCCACC
CCCCTCCTTTTCCTTTCCCTTATATTCCTTTTCACTTTTTTTCCCCCCTT
TTTTTTTCCCTTTTCCCCTTTTTTTTTTTTCCCCCCCCATCTTATTTTCT
TCCCCCTCCCCCCTCCCCT

NCCCCCCAATGATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATAGACCAGGCTGG
CCTCAAACTCAGAAATCCGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCGTGCGCCACCACCACCTGGTGTATCCCACGTATTTGGATGATAGAA
GCTCATCTCTGTTTTATTCAGTGCTGGATATCCAGCCCAGAGTGCCTGCA
CACCATGCTTGCATTGTGCCACTGAGCTGAACTCCCGGCCTGGGTCCATC
AGACGCGAGGTGAGGTGTGGTGGGCTTTCTACCGACATTCAGATTCCAGC
AGAATCAAAACTGCATGCTAAGACAAAACACCCCAGACTCCCCTTGACAT
AACAGACAGTGTCGGGGCAATTCTGAGAAGCAAGATTCAGTGCAGCATTG
TTCTCAGGGAAGGCTCAGAGTCCTGTCATCCTCTCTTTGCTTCTTAGCTC
TACAATCAAATATTCTCTTACTGCCTTCTGGAGCTCCCAAGTCTAGACAC
TATAATTATCATGGCAATTTCTCCCATGCCCCTAATTAGCAGCGAACTAA
AAAACCCTTGGAGAAGAAAAGCCAGGACCCTCCCCCGCCTCCAGCACTAA
TATTCTGCCAAAGCCTCCCCCGAAATTAATCCCAATAACAGGGAGGAAAA
ATCTTCCCCTTCCTTCCGTCCCTATTTCCCCCCCAATTGGGGCTCCTTGT
ACCCCTCGACAAAAAAAAG

Query= MSMg01no442_p03.b1 MSMg01no442_p03.b1 CHROMAT_FILE:
MSMg01no442_p03.b1 PHD_FILE: MSMg01no442_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:22 2005
         (314 letters)



>mm_chr5_106107100_106107813
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcacactcagagatctgcctcctgattgctggaattaaagacatgcaccacataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcctcacactcagagatctgcctcctgattgctggaattaaagacatgcaccacataat 260

                                                                       
Query: 61  taagttttttagttagcacgcaaaagttccaggacagcaagggctacacagagaaaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagttttttagttagcacgcaaaagttccaggacagcaagggctacacagagaaaccct 320

                                                                       
Query: 121 gccttgaaaaaaagtttcattaccgcctatcacttgttcctgttattgttcctgttgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttgaaaaaaagtttcattaccgcctatcacttgttcctgttattgttcctgttgctc 380

                                                                       
Query: 181 atgtctgcccacaactaccctccaagccaacctctttcgtttctcctcctcctcctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 atgtctgcccacaactaccctccaagccaacctctttcgtttctcctcctccttctcctc 440

                                                                       
Query: 241 tggattcatctctaaacagtcccctcttttcaccgggagtggtggtgcatgcctttaatc 300
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tggattcatccctaaacagtcccctcttttcaccgggagtggtggcgcatgcctttaatc 500

                         
Query: 301 ccagcactcgggag 314
           ||||||||||||||
Sbjct: 501 ccagcactcgggag 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_p03.g1 MSMg01no442_p03.g1 CHROMAT_FILE:
MSMg01no442_p03.g1 PHD_FILE: MSMg01no442_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:22 2005
         (453 letters)



>mm_chr5_106289111_106289963
          Length = 853

 Score =  806 bits (417), Expect = 0.0
 Identities = 444/453 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttatagaccaggctggcctcaaactcagaaatccgcctgtctctgcctcccaagtgc 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 748 actttatagaccaggctggcctcgaactcagaaatccgcctgtctctgcctccccagtgc 689

                                                                       
Query: 61  tgggattaaaggcgtgcgccaccaccacctggtgtatcccacgtatttggatgatagaag 120
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 688 tgggattaaaggcgtgcgccaccaccacctggtgcatcccacgtacttggatgatagaag 629

                                                                       
Query: 121 ctcatctctgttttattcagtgctggatatccagcccagagtgcctgcacaccatgcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctcatctctgttttattcagtgctggatatccagcccagagtgcctgcacaccatgcttg 569

                                                                       
Query: 181 cattgtgccactgagctgaactcccggcctgggtccatcagacgcgaggtgaggtgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cattgtgccactgagctgaactcccggcctgggtccatcagacgcgaggtgaggtgtggt 509

                                                                       
Query: 241 gggctttctaccgacattcagattccagcagaatcaaaactgcatgctaagacaaaacac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gggccttctaccgacattcagattccagcagaatcaaaactgcatgctaagacaaaacac 449

                                                                       
Query: 301 cccagactccccttgacataacagacagtgtcggggcaattctgagaagcaagattcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cccagactccccttgacataacagacagtgtcggggcaattctgagaagcaagattcagt 389

                                                                       
Query: 361 gcagcattgttctcagggaaggctcagagtcctgtcatcctctctttgcttcttagctct 420
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 gcagcattgttctcatagaaggctcagagtcctgtcatcctctctttgcttcttagctat 329

                                            
Query: 421 acaatcaaatattctcttactgccttctggagc 453
           ||||| |||||||||||||||||||||||||||
Sbjct: 328 acaattaaatattctcttactgccttctggagc 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)