Query= MSMg01no443_a04.b1 MSMg01no443_a04.b1 CHROMAT_FILE:
MSMg01no443_a04.b1 PHD_FILE: MSMg01no443_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:28 2005
(235 letters)
>mm_chr5_35302672_35303306
Length = 635
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%)
Strand = Plus / Minus
Query: 1 tcccctctcaagtcagtgttcctttggtcccctcacggtgctcctagacctctgaaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcccctctcaagtcagtgttcctttggtcccctcacggtgctcctagacctctgaaacct 376
Query: 61 ggccctcccttcccttctggctccagctcatggctggcctccctcttgtgcagcctctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggccctcccttcccttctggctccagctcatggctggcctccctcttgtgcagcctctcc 316
Query: 121 ttttacacccttgctcctctaaggatgggcccatctgtctcctcagccccaaggttatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttttacacccttgctcctctaaggatgggcccatctgtctcctcagccccaaggttatcc 256
Query: 181 actccgggcttttctacctgcttatctcctgcaagcaagcccaacaccacagccc 235
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 actctgggcttttctacctgcttatctcctgcaagcaagcccaataccacagccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_a04.g1 MSMg01no443_a04.g1 CHROMAT_FILE:
MSMg01no443_a04.g1 PHD_FILE: MSMg01no443_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:28 2005
(470 letters)
>mm_chr5_35163449_35164318
Length = 870
Score = 878 bits (454), Expect = 0.0
Identities = 468/476 (98%), Gaps = 6/476 (1%)
Strand = Plus / Plus
Query: 1 taggtgactatgagccacctgatgtggatgctgggaaccaaactcgggtccttcagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 taggtgactatgagccacctgatgtggatgctgggaaccaaactcgggtccttcagaaga 254
Query: 61 gcagtaagtaggcacttttgaccagtgagccatctttccagcccccagcaccattgggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcagtaagtaggcacttttgaccagtgagccatctttccagcccccagcaccattgggtt 314
Query: 121 tttttgc------tttttttttttttttttaagttaagttttagttagttgtgtcttttg 174
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttttgctttttttttttttttttttttttaagttaagttttagttagttgtgtcttttg 374
Query: 175 agcaatgaaggcatgctgatagcacaggtgctatgctgatagatataagtgtgttatcct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agcaatgaaggcatgctgatagcacaggtgctatgctgatagatataagtgtgttatcct 434
Query: 235 tgtataggataactattggataattaatgcctttaagctctgaggctgaaggtcctatag 294
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgtataggataactacaggataattaatgcctttaagctctgaggctgaaggtcctatag 494
Query: 295 caatataagatccaccttgattccttccttgtccatcaagaaagttgagtcacatctaag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caatataagatccaccttgattccttccttgtccatcaagaaagttgagtcacatctaag 554
Query: 355 atactctttgatatgggtctcttctccttatgctggacctgagacttcttttcacatgtg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atactctttgatatgggtctcttctccttatgctggacctgagacttcttttcacatgtg 614
Query: 415 gcaggactatgttgtgtcatcttcctctaaaccagtggttagtgttcctgagattg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gcaggactatgttgtgtcatcttcctctaaaccagtggttagtgttcctgagattg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
